Setaria viridis (green foxtail): 117838354
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Entry
117838354 CDS
T07951
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117838354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117838354
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117838354
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Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
117838354
NCBI-ProteinID:
XP_034574245
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All DBs
Position
9:54750474..54758029
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AA seq
937 aa
AA seq
DB search
MLQSKSFVKKTKQGRIQKVVREHYLRDDIYCGFVPCSACDAAAERKLVADAAAILVVDTN
VVLHQIDLLENPAIEDVVLLSVVLDEVKNKNLAVFNRIKALCTNKARRFYVFANEQHRDT
YVKDMVGESSNDRNDRAIRVAAHWYQSHLGESVKVLLITNDRDNKRKAIEEGLNAETVES
YVRSLAQPGLLDLVVVPTSGDVTMEDVEDHRPSKRKVIYSEHKPMSEITSGLRCGIYHQG
KLRVNRYNPFEAYVGSESIGDEIVIRGRSNMNRAFDGDIVAVELLPQDQWHESKSFIADD
DEEEEEEEDVHLVPNSADDAPRNASSTQSSVGSSAPSVSSRPVGRVVGIIKRNWNSYCGS
LQPMPMPAGSGGVAHALFVSKDRRIPKIRIQTRQLENLVNKRIVVAVDSWGVLSRYPSGH
YVRTIGDIGDKETETEVVLIENDINTRPFSTQVLACLPPLPWTLSQEDLANPNRQDLRHV
RVFSVDPPGCRDIDDALHCTLLPNGNFEVGVHIADVTNFVHPGTPLDEEAAQRGTSVYLV
GQRIDMLPKPLTEDVCSLRADVERLAFSVIWKMTPDADIISTRYTKSVIKSCAAMSYVEA
QARMDDSRLVDPLTVDLRNLNSLAKIMRQRRCDRGALTLASAEVKFEIDSETHDPLDIGI
YQIREANQMIEEFMLAANISVAEKILKHFPLCSLLRRHPSPTKEMLEPLLRTASSIGLNL
DVSSSKALAESLDNAKSNDPYFNKLIRILATRCMTQAVYFCSGDLTFSEYYHYGLAASLY
THFTSPIRRYADVVVHRLLAAALEIAKLPPIFQDGPQLTGIADNLNYRHRNAQMASRASV
ELHTLIYFRTRPTDTEARIVKVKANGFIVFVPKFGIEGPIHLTPKGDKGGDWVVDEVHQR
VTKPGTNISYAVLQTVRIHMEVVEPQPHRPKLQLTLI
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagagcaagtcattcgtgaagaagacgaagcaaggccgcatccaaaaggtcgtc
agggagcactacctccgcgacgacatctactgcggtttcgtcccctgctccgcctgcgac
gcggccgcggagcgcaaactcgttgccgacgcggccgccatcctcgtcgtcgacaccaac
gtcgtgctccaccagatcgatttgctggagaacccggcgattgaggatgtcgtcctgctg
tcggtggtcctggacgaggtgaagaataagaaccttgcggtgttcaacaggatcaaggca
ctatgtaccaacaaagcacggaggttctacgttttcgccaacgagcagcacagggatact
tatgtcaaagacatggttggggaaagttctaatgatcgtaatgacagagcaattcgtgtt
gctgctcattggtaccaaagccatcttggtgagagtgtgaaggttctgctgattacaaat
gacagggataacaaaaggaaagctattgaagaaggccttaatgctgagacagttgagtca
tatgtaagatcgcttgcgcagcctggtttgcttgatttggtggttgttccaactagcggg
gatgttaccatggaagatgtagaagatcatagaccatccaagaggaaagtaatctacagt
gagcataaaccaatgtcagaaattacatctggtctgcgctgtggaatctaccatcaagga
aagcttcgagttaatcgttacaatccatttgaagcttacgtgggaagtgagagcattggc
gatgagattgttatccgtggccgctcaaatatgaacagggcctttgatggtgatatagtt
gctgttgagctcttgccacaagatcaatggcatgagtcaaagtcatttatagcagacgat
gacgaagaagaagaagaagaagaagatgtccatctggttcctaatagtgctgatgatgct
cctcggaatgccagttccacacaatcatcagttggatcatcagctccttctgtctctagt
cgtccagttggacgtgttgttggtataatcaagcgaaattggaattcgtactgtggatcc
ttgcagccaatgcccatgcctgctggtagtggaggcgttgctcatgctttatttgtttca
aaagatagaagaattcctaaaatccgaattcaaacaaggcagcttgaaaatctcgtgaac
aaaagaattgttgttgcggttgattcatggggtgttttgtctcgatatccatcaggtcac
tacgtacgaaccattggagatattggtgacaaagaaactgaaacagaggttgtcttaata
gagaatgatatcaacacgaggcctttctctacacaagtccttgcttgtttgccaccatta
ccatggacattatcacaagaagatttggctaatcctaatagacaagacttgcgccacgtg
agagtctttagtgtggacccaccaggttgtcgagatattgatgatgcactgcattgcacc
ctacttccaaatgggaattttgaagttggagtccatatcgctgatgttactaattttgtt
caccctggtacccctcttgatgaggaagctgcgcaaaggggcacatctgtttatcttgtt
gggcagcggattgatatgcttccaaagcccctgactgaagatgtttgctcactacgtgct
gatgttgaaaggctggcattctctgtcatttggaaaatgactcctgatgctgatatcata
tccacgagatatacaaagagtgttatcaaatcttgtgctgcaatgtcttatgtggaagcc
caggcaagaatggatgacagccgtttagttgatccactaactgtagacttgcggaactta
aattcattggcaaagatcatgcgacagcgacgttgtgacagaggggctctgactcttgct
tctgcagaagtaaaatttgagatcgatagtgaaactcatgaccctcttgacataggaatt
tatcaaatccgcgaggcaaatcaaatgattgaagagtttatgttggctgcaaatatttct
gttgctgagaagattttgaagcacttccccctatgttctttactaaggcgtcatcctagc
ccaacaaaggagatgcttgagccattactccgtactgcctcttctattggcctaaatctg
gacgtgtcatcctcaaaggcattagctgaatcacttgacaatgcaaagagcaatgaccca
tacttcaataagcttattagaattttggcaactagatgcatgacacaggccgtttatttt
tgcagtggagatttgaccttttctgagtattaccattatgggcttgcagcttctctttac
actcatttcacttctcctattcgcagatatgcagatgttgttgttcataggttgctagct
gcagctctagaaattgcaaagctcccaccaatctttcaggatggtccacaacttacaggc
atcgctgacaacttgaattacagacatcgaaatgcccagatggcaagcagagcatcagtt
gaactccacaccctcatatatttcaggacaaggccaactgatactgaagctaggatagta
aaggtcaaggcaaatggtttcatagttttcgtcccaaagtttggcatagaagggcccatc
caccttactcctaaaggagacaagggtggcgactgggtagttgatgaggtgcaccagagg
gtaaccaagcctggaacaaacatcagttatgctgtcctgcaaactgttaggattcatatg
gaagtagttgagcctcagcctcaccgcccaaagctgcaactcaccctcatttga
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