Setaria viridis (green foxtail): 117838639
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Entry
117838639 CDS
T07951
Name
(RefSeq) probable pectate lyase 5 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00040
Pentose and glucuronate interconversions
svs01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117838639
Enzymes [BR:
svs01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117838639
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
HOXB-AS3
Motif
Other DBs
NCBI-GeneID:
117838639
NCBI-ProteinID:
XP_034574631
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All DBs
Position
9:17750311..17755547
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AA seq
481 aa
AA seq
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MAGAPKSTGIALIPLLLLAATASTLPLLNSSVPDPAAVVADFHSKVATSRRRMQEAGGGA
SSGGCMTGNPIDDCWRCAGTDWRQDRQRLADCGIGFGRNALGGKGGPLYVVTDSSDRDPV
NPVPGTLRHAAIQEGPLWIVFAADMTIRLNEELLVNSYKTIDGRGARVHIGAGGACITLQ
YVSNIIIHNVHVHDCVPAGNANVRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALWRCA
DGLVDAIEGSTAITVSNSYFAHHDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMPR
CRRGYFHIVNNDYTSWEMYAIGGSASPTINSQGNRYIAPADPNAKEVTKRVDTAEGQWSG
WNWRTEGDMMVNGAFFVPSGEGMEEIYEKASSTDPKSSALVDTLTQNAGVLGDPRNDAEE
TGYTGLNYAGVGNGRGGGGNGYGYLGMVYANDADRGRRSRSMLSLTSSVVTLVALGCLRL
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcccctaaatccaccggcattgccctcatccccctcctactgctcgccgcc
accgcctcgacgctcccccttctcaactcctcggtccccgaccccgccgccgtcgtcgcc
gacttccacagcaaggtggcgacttcgcggcggcggatgcaggaggccgggggaggcgcc
agcagcggcgggtgcatgacgggcaaccccatcgacgactgctggcggtgcgcggggacg
gactggcgtcaggaccggcagcggctggcggactgcggcatcgggttcggccgcaacgcg
ctgggcggcaagggcgggccgctgtacgtggtgacggactcctccgaccgggaccccgtg
aaccccgtcccgggcacgctccgccacgccgccatccaggaaggcccgctctggatcgtg
ttcgccgccgacatgaccatccgcctcaacgaggagctcctggtgaacagctacaagacc
atcgacgggcgcggcgcgcgcgtgcacatcggcgcggggggcgcctgcatcacgctgcag
tacgtgtccaacatcatcatccacaacgtgcacgtccacgactgcgtccccgccgggaac
gccaacgtgcggtcgtcgccgacgcactacgggtggcggacgcggtcggacggcgacggc
atctcgctgttcggcgcccgggacgtgtgggtggaccactgcgcgctgtggcggtgcgcg
gacgggctggtggacgccatcgaggggtcgacggccatcaccgtgtccaacagctacttc
gcgcaccacgacgaggtgatgctgctgggcgccagcgacgcgtacctcccggactcgggg
atgcaggtgaccatcgcgttcaaccgcttcggcccggggctggtgcagcggatgccgagg
tgccggagggggtacttccacatcgtcaacaacgactacacgtcgtgggagatgtacgcc
atcggcggcagcgcaagccccaccatcaacagccaggggaaccgatacatcgcccccgcc
gacccgaacgccaaagaggtaacgaagcgggtggacacggcggaggggcagtggtcgggg
tggaactggcggacggagggcgacatgatggtgaacggcgccttcttcgtgccctccggc
gaggggatggaggagatctacgagaaggcctccagcaccgaccccaagtcatcggcgctc
gtcgacacgctcacgcagaacgccggcgtcctcggcgaccccaggaacgacgccgaggag
accgggtacacggggctcaactacgccggagttgggaacggccgcggcggcggcggcaac
ggatacggctacctcgggatggtctacgccaacgacgccgatcggggtcgcaggtcgcgg
tccatgctgtcgctgacctcgtcggttgtcaccctcgtggcgctcggatgcttgcgcttg
ttgtaa
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