Setaria viridis (green foxtail): 117838716
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Entry
117838716 CDS
T07951
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117838716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117838716
Enzymes [BR:
svs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117838716
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117838716
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117838716
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
117838716
NCBI-ProteinID:
XP_072146842
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Position
9:20451530..20458238
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AA seq
606 aa
AA seq
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MLSVVRVHLPSEIPIVGCEITPYVLLRRPDGAVSTDDVPETAPNDGQYMRYRWYRIQSDR
KVPICSVHPMEQATIQCLGCLKSKIPVAKSYHCSAKCFSDAWQHHKVLHERASSALNENG
AEEEELFGRFGSGGSGVLSTAGSGSLSNFGQSPGVNNGPVPLYASGTDKNSGETWFEVGR
SRTYTPTADDIGHALKFECVAVDAEKRSPMGPPTSIMTSRVIPAPTPTPRRLIQVNGDVL
GHLDLDSQTSSSGTFTVLSYNILADAYATSDAYSYCPTWALSWTYRRQNLLREIIGYHAD
IICLQEVQLNHFEDFFAPELDKHGYQALYKKRTTEVYSGNPMAIDGCATFFRRDKFSHVK
KYEVEFNKAAQSLTDAIIPAAQKRVALSRLIKDNIALIAVLEAKFGNHGAENPGKRQLLC
VANTHINVHQDLKDVKLWEVHTLLKGLEKIAVSADIPMLVCGDFNSTPGSSPHGLLAVGK
VDQLHPDLAIDPLGILRPPSKLNHQLPLVSAYSSFARMVGVGYDLEHQRRRMDPATNEPL
FTNCTRDFTGTVDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRC
KPRIRR
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtggttcgggtgcacctgccgtcggagatcccgatcgtgggctgtgagatc
acgccctatgtgctgctgcggcggcctgacggcgcagtctccaccgacgacgtgcccgaa
accgcgcccaacgatggccagtatatgcgatacagatggtatcgcatacagagcgatcgg
aaagttcccatctgcagtgtacatccaatggagcaagcaacaattcagtgcctaggctgt
ctcaagtcaaaaatacctgttgctaagagctaccactgttcagctaaatgcttctctgat
gcatggcagcaccacaaggttttgcatgagcgagcaagtagtgctttaaatgaaaatgga
gctgaagaggaggagttatttggcagatttggcagtggtggttctggggttttaagtact
gctgggtctggttcattgtcaaattttggacagagccctggtgttaataatgggcctgtg
cctttatatgcctcaggcactgataagaactctggagaaacttggtttgaagttggacgc
tcgcggacatatacaccgacagctgatgatattgggcatgcactaaaatttgagtgtgta
gctgtggatgcagagaaaaggtctccaatgggacctccgacttcaattatgacatctcgt
gtaatccccgcaccaacccccaccccacgtcgccttatccaagtgaatggagatgtttta
ggtcacttggatttagacagccaaacttcgtcatcagggacattcactgtactgtcctac
aatattcttgctgatgcatatgctacaagcgatgcatatagctactgcccaacatgggca
ctttcctggacttacagaagacaaaatttgttgcgtgaaattattggttaccatgctgat
atcatttgtcttcaggaggtacaattaaaccacttcgaagatttttttgcacctgagctt
gacaaacatggatatcaggcgctttacaagaaaaggacaacagaggtgtattctggaaat
cctatggccattgatgggtgtgctacttttttccgcagagacaaattttcacatgttaaa
aaatatgaggttgagttcaataaggctgcacagtctttaacagatgcaattattcccgct
gctcagaaaagggtggctttaagtcgattgattaaagacaacattgcactaattgcggtt
ttagaagccaaatttggtaaccatggagctgaaaatcctggtaaaaggcagctcctttgt
gtggcaaatacacatataaatgtccatcaagacctaaaagatgtgaagctttgggaggtt
cataccctcctaaaaggattggagaagatagctgtcagtgcagacattcctatgttggtc
tgtggagatttcaattcaacccctgggagttctccacatgggcttcttgcagtgggtaaa
gttgatcagctgcatccagatctggccatagacccccttggaattttacgccctccaagc
aagttgaatcatcagcttcctctggtcagtgcatattcttcttttgcaagaatggtaggt
gttggctacgatttagagcaccagcggagaaggatggacccagcaacgaatgaaccgctc
ttcacaaattgcacgagagattttactgggactgttgattatatattttacacagcggat
tcattgacggtggagtcgttattggaacttctagatgaggaaagcttgagaaaagacacg
gctctcccttcacctgagtggtcatcagatcacatagcccttttggccgagttccggtgc
aagcctagaatcagacggtga
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