KEGG   Setaria viridis (green foxtail): 117838869
Entry
117838869         CDS       T07951                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4 isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03020  RNA polymerase
svs03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117838869
  09124 Replication and repair
   03420 Nucleotide excision repair
    117838869
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:svs03021]
    117838869
   03400 DNA repair and recombination proteins [BR:svs03400]
    117838869
Transcription machinery [BR:svs03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     117838869
DNA repair and recombination proteins [BR:svs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      117838869
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 117838869
NCBI-ProteinID: XP_034574950
LinkDB
Position
1:9881124..9924678
AA seq 143 aa
MPGEEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQQHASESDPSSQVSQVFEKS
LQYVKRFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSGEATALVPSLKSGGRF
VGDAGNEKIEKMLNDLSLIKKFE
NT seq 432 nt   +upstreamnt  +downstreamnt
atgcccggcgaggaggaggagaacgccgccgagctcaagatcggcgaagagttcctgaag
gccaagtgcctgatgaactgcgaggtggcgatcatcctggagcacaagtacgagcagatc
cagcagcacgcgtcggagtcggacccgtcgtcgcaggtgtcgcaggtgttcgagaagtcg
ctgcagtacgtgaagcgcttcagccgctacaagaaccccgacgccgtgcgccaggtccgc
gagacgctcagccgctacggcctcgccgagttcgagctctgcacgctcggcaacctctgc
ccggacaccagcggcgaggccaccgcgctcgtaccatccctcaagtccggggggaggttc
gtcggtgacgccggcaacgagaagattgagaagatgctcaacgacctctccctcatcaag
aagttcgagtag

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