Setaria viridis (green foxtail): 117838950
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Entry
117838950 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K12816
pre-mRNA-processing factor 17
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117838950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117838950
Spliceosome [BR:
svs03041
]
Complex C
Other components
Step II factors
117838950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
eIF2A
Beta-prop_Vps41
Beta-prop_NWD2_C
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
117838950
NCBI-ProteinID:
XP_034575051
LinkDB
All DBs
Position
9:complement(41743568..41746708)
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AA seq
572 aa
AA seq
DB search
MDLLQSSYAPDDASSPEESAAASSPDSSPLRLPSKSAAPAVDDTALALSAAASASRPLDP
SLHLVAFNPTADQLWAPIVGPQHPHAPISSASGNRNHKLGHVEDAAVLPFLFDEQYNTFH
RFGYASDPSGLHIVGDAQSQAPEPDTVYNLAPSEHKRRRLLAKADNQEEPLPPDARNPAS
EEWILHNKQSPWAGKKEAPPAELTEEQKQYAEAHAAKKAEKEARGEGKGERAEVVVKSTF
HGKEERDYQGRSWITPPKDAKASNDHCYIPKRCVHEWVGHTKGVSAIRFFPKYGHLLLSA
SMDCKIKIWDVLGSRTCMRTYMGHSKAVRDISFSNDGTKFLSAGYDRNIQYWDTETGQVI
STFSTGKVPYVVKLNPDEDKQHILLAGMSDKKIVQWDMKSGQITQEYDQHLGAVNTITFV
DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIALHPNSNWLAAQSLDNQILI
YSTKERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGSCWFWDWKSCRRFKTLK
CHNGVCIGCEWHPLETSKVATCGWDGVIKYWD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggatctcctccagtcctcgtacgcgccggacgacgcctcctcgccagaggagtcggcg
gccgcttcctcgccggactcctccccgctccgcctcccctccaagtccgccgcccccgcc
gtcgacgacaccgcgctcgcgctctccgccgccgcctcggcctcccgcccgctcgacccc
tctctccacctcgtcgccttcaaccccaccgccgaccagctctgggcgccaatcgttggg
cctcagcacccccacgcccccatctcctccgcctccggcaaccgcaaccacaagctgggc
cacgtcgaggacgccgcggtactgcctttcctcttcgacgagcagtacaacaccttccac
aggttcggctacgcatccgacccctccggcctccacatcgtcggcgacgcgcagtcgcag
gcgcccgagcccgacaccgtctacaacctcgccccctccgagcacaagcgccgccgcctc
ctggccaaggcggacaaccaggaggaaccactgcccccggatgccagaaatccggcctcc
gaggagtggatcctccacaacaagcagagcccctgggctggcaagaaggaagcgccgccc
gcggagctcactgaagagcagaagcagtatgccgaggcgcacgcggccaagaaggcagag
aaggaggctcgcggtgaagggaagggcgagagggcagaggtggtggtcaagagcaccttc
cacgggaaggaggagagagactaccaggggaggtcctggatcacaccacccaaggatgcc
aaggccagcaacgaccactgctacatccctaagaggtgtgtgcatgagtgggtcggccac
accaaaggggtttcagccatcagatttttccccaagtatgggcatctcttactgtctgcg
agtatggattgtaagattaagatctgggatgtgctcgggtcgcggacatgtatgcgcaca
tatatgggtcactcaaaggcagtgagggatatttcgttctccaatgatgggaccaaattc
ttgagtgctgggtatgacaggaacatacagtactgggatactgagacagggcaggtgatc
tcgaccttctcaaccgggaaggtcccatatgttgtgaagctgaatcctgatgaggataag
cagcatattctccttgccggaatgagcgacaagaagattgtgcaatgggatatgaaatca
gggcagataacacaagagtacgatcagcatttaggggctgtgaacaccataacatttgtc
gataataacaggaggtttgtgacatcgagtgatgacaagtctcttcgtgtttgggagttt
ggcatccctgtggtgattaagtatatcagtgagccgcacatgcactcaatgccatcaatt
gcgctgcacccaaactctaactggctggcagcacagagcttggacaatcaaatactgata
tacagcaccaaggagaggttccaactcaataagaagaagcgatttgctggccacattgta
gcaggttatgcttgtcaggtgaacttctcacctgatgggagatttgtgatgtcaggtgac
ggtgaaggtagctgctggttctgggattggaaaagctgcaggaggtttaagacattgaag
tgccacaatggggtctgcattggatgtgagtggcatccgttggaaactagcaaggttgca
acatgtggatgggatggtgtaattaaatactgggattga
DBGET
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