Setaria viridis (green foxtail): 117838975
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Entry
117838975 CDS
T07951
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
117838975
03036 Chromosome and associated proteins [BR:
svs03036
]
117838975
Transcription factors [BR:
svs03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
117838975
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117838975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ADD_ATRX
KARI_C
Motif
Other DBs
NCBI-GeneID:
117838975
NCBI-ProteinID:
XP_034575083
LinkDB
All DBs
Position
9:complement(17645686..17663078)
Genome browser
AA seq
1479 aa
AA seq
DB search
MILCMNQDGILPDDKLKNMESVQTNGQLGDDDIIIIDSQSDENKVGAKSSIREDLFKEHK
EPVCKTMDNDVNEETSITDDDSEADSFEFFVHESDNEQALGSEKDTEVPLTEEEVEELVC
EFLEVESKAAQAQESLEKESLDKIETEVRLELSERLQGEELESAVSTEMEQFQVQWENEL
DNLETRSSILLEQLDAAGIELPRLYKSIESQVPNVCETEAWKSRAHWAGSKVPEEANQSI
KKADEYLQSCRPVRRKHGRLLEEGASGFLAGKIPVGDGDSIQCHERSWSSFNELIKSKES
AENTFGSSNWASVYLASTPQEAAALGLQFPGVDEVEEISEVDGVFDDIKGLDEVELSEEQ
RRKYRKVKEEDDAKIMNCLQRRLKGKRMRGTKENFGLVSSCHEKPLSENGVLGAKSDLPS
SKKLKIDENKLSIEELFQKRSETVIIESDDEMQIDRKPGEGSSARVEKVADIIDLDDPSQ
SPKLSDKSLPKAFKCTICTEILNASEVHRHPVLDVTVCGPCRFLVIEKNRLEDPVSGGYC
TWCAQSELLQSCSSCKLLFCRNCLLKNLGEECLSEAIATGWQCCCCVPSQLEVLISECDK
ALSGVESSDSESSDTHLSGPETNGPVSKRRMKKRIRRIMDDTELGEETKRKIAMEKARQD
HLKSMQEQSAGKLRSENVGTSFGAPSEVSLKDAGDGHIVNLAREEDEEPVRIPSSMSFKL
KPHQVEGIRFMWENVIQSVKKVKSGDKGLGCILAHNMGLGKTFQVITFLYTVMKCAQLGL
RTALIVTPVNVLHNWRKEFIRWHPAELKPLRVFMLEDVARVKRPDLLTKWRVKGGVLLIG
YSSFRSLSLGKHVKDKNVANEITYALQCGPDILVCDEAHMIKNRRADITQALKQVRTQRR
IALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQR
SHILFEQLKGFVQRMSMNVVKNDLPPKKVFVITVKLSQLQRKLYRRFLDVHGFSSSGYSE
KSHSSFFAKYQTLAQVWNHPGLLQMSKEQRGTLRHEDAVENFMMDESSSDDNTENYFPNG
GNCLCPEMEKQKDRADQQSKKSNFVNEESNWWEELLDENTYMEADYSGKMILLLDILSKS
SELGDKVLVFSQSLTTLDLVEFYLSKLQIKGKEGKHWKRGKDWYRLDGSTPSSDRQNLVE
MFNDPENARVKCTLISTRAGSLGINLHAANRVVLLDGSWNPTHDLQAIYRVWRYGQTKPV
YAYRLMAHRTMEEKIYKRQVTKEGLAARVVDRQQVSRTISKEEMLHLFEFGEEELMEQNE
NGSTMTEKPFTSNTSGTSEPVPVDRLMLNLLSEQTGWIAGYHEHEALLQENEEERLTKEE
QDMALSEWEALRKGVRDPERKSNMTAVPADPNVVRSVKAASRSRQPQQPKVNSNNQKKCN
NLTHMLTLRSEGTKAGCTITCNECGQEICWETLNRDRTR
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atgatactatgtatgaatcaggatggaatattgccggatgacaagttgaaaaatatggaa
tctgttcaaacaaatggacagctaggagatgatgatataataattattgactctcaaagt
gatgaaaataaagttggagctaaaagtagcataagagaagatctctttaaggagcataag
gagcctgtatgcaaaacaatggacaatgatgtgaatgaagaaacatccattactgatgac
gattcagaggctgactcattcgaattctttgtccacgaatcagataatgaacaagcttta
ggatctgagaaagacaccgaggtacctctaactgaggaagaagttgaagaattggtttgt
gaatttcttgaagttgagagcaaagcagctcaagcgcaagagtcacttgaaaaggagtca
ttggacaaaattgaaactgaagtaagattggagttatccgagaggcttcaaggagaagag
ttagaatcagctgtctcaactgagatggagcaattccaggtgcaatgggaaaatgaactt
gataatctggagacccgtagttctattctgctggagcaacttgatgctgctggaattgaa
cttcccagactctataagtcaattgaaagtcaagttccaaatgtttgtgaaactgaagca
tggaagagcagggcccattgggctggttctaaagtgcctgaagaagctaaccaatccatt
aaaaaggctgatgaatacctccagtcttgcagacctgtaaggagaaaacatgggaggttg
ctggaggaaggtgctagtggctttcttgccggaaaaattcctgttggggatggtgattct
attcagtgtcatgagagaagttggagctcattcaatgaacttattaaatctaaggagagt
gctgaaaatacttttggtagcagtaactgggcatcagtttatcttgcaagtaccccccag
gaagctgcagcattgggtctccagtttcctggagttgacgaggtggaggaaatatctgaa
gttgacggtgtttttgatgatataaaaggtctagatgaagtagaactttctgaggaacag
agaaggaaatacagaaaggtaaaggaagaggatgatgcaaaaataatgaattgcctgcag
cgtcgtttgaaagggaaaaggatgagaggcactaaggagaattttggtttggtctcatca
tgccatgagaagcctctatcagaaaatggtgttttgggtgctaaaagtgaccttccttca
tctaaaaaactcaaaattgatgaaaacaaactttctattgaggagcttttccagaagaga
tcggaaactgtgataatagaaagtgatgatgaaatgcagatagatagaaaaccaggggaa
ggtagctcagctagagttgaaaaggtggctgatatcattgatcttgatgacccatcacaa
agccctaagctcagtgataaaagtttgcctaaagctttcaaatgtaccatttgcactgaa
atattgaatgcctctgaggtgcatcgccacccagtactggatgttactgtttgcggaccg
tgcagatttcttgtgatcgagaagaatcgtcttgaggatcctgtatctggtggttattgc
acttggtgtgcacaaagcgaactacttcaaagttgtagttcttgtaagctgcttttctgt
agaaattgtttgttgaagaatttaggtgaagaatgcttatcggaagctatagccactggt
tggcagtgttgctgctgtgtacccagtcaactggaagttttaatttctgaatgtgacaag
gccctcagtggtgttgaatcttctgattcagagagcagcgacacacatctttctggaccg
gaaaccaatggtcctgttagcaagcgaagaatgaagaaaaggattagaagaattatggat
gatacagaacttggtgaggaaactaagcgcaaaattgcaatggagaaggcaaggcaagac
catttgaagtccatgcaagagcaatctgccggcaagttaagaagtgagaatgttggaact
tcctttggagccccatcggaagtctctttaaaggatgctggagatgggcatatagtcaac
cttgccagagaggaagatgaggaacctgttaggattccaagcagcatgtcttttaaactg
aagcctcatcaggtagaaggaataaggtttatgtgggaaaatgttattcaatctgttaaa
aaggtgaaatccggggataaaggtcttggctgcattttggcgcataatatgggccttggg
aaaacctttcaggttattacattcctctacactgttatgaaatgtgctcaattgggtttg
cgcacagcacttattgttacccctgttaatgttcttcataactggaggaaagagtttatc
aggtggcatccagccgaactgaagcctcttcgtgtttttatgttggaagatgttgccagg
gtgaaaagaccagatttactaaccaaatggcgagtaaaaggcggagtgcttctcattggt
tattcatcatttaggagcttatcccttggaaagcatgtgaaggacaaaaatgtcgcaaat
gaaattacttatgctttgcagtgtgggccagacattcttgtatgtgatgaagcacatatg
ataaagaataggagggctgacattacacaggctctgaaacaagtaaggacacagagaaga
attgcgttaactggatctccgttgcagaataatttgatggaatattattgtatggttgat
tttgttagggaaggctttcttgggagtagccatgaattccgaaacaggttccagaacccc
attgaaaatgggcagcacacaaattcaacatcagatgatgtaaagatcatgaaccaacga
tcgcacattttgtttgaacaactgaaaggttttgtccagcggatgagcatgaatgttgtg
aagaatgatctaccacctaagaaggtttttgttattactgtaaagctatctcagctgcaa
aggaagctatacagaagattcttggatgttcatggtttctcaagtagtggttactcagaa
aaatctcacagttccttctttgccaagtaccaaacattagcccaggtatggaatcatcca
gggctcctccagatgtctaaagaacagagaggaactttgcgtcatgaggatgctgttgag
aattttatgatggatgagagttcaagtgatgataatactgaaaattactttcctaatgga
ggtaattgtttatgtccagagatggagaagcagaaggatagagctgaccagcagtccaaa
aaaagcaactttgtgaatgaggaaagtaactggtgggaggaacttctagatgagaatact
tacatggaggcagattacagtggcaaaatgattttgctccttgatatcctgtcaaaaagt
tctgaattgggcgacaaggtattggtgtttagccagagcttgactaccctggatttagtg
gagttttatctgtcaaaattgcaaattaaaggaaaagaaggcaaacattggaagcggggg
aaggattggtataggcttgatgggagcactccatcttctgatcggcagaatcttgtggag
atgtttaacgaccctgaaaatgcaagagtgaaatgcacgttgatatcaactcgtgctgga
tctctgggcattaaccttcatgctgcaaatcgtgtggttcttttggatggatcctggaat
ccaacacacgatctgcaagccatttatcgagtttggaggtatggccagaccaaacctgta
tatgcttaccgcctaatggcacatcgaacaatggaagagaaaatatataagcgacaggtg
acgaaggaaggcctcgcagcaagggtggtggacagacagcaagtttcaagaaccatctcc
aaagaagagatgttgcatctttttgaatttggtgaagaggaattaatggaacagaatgag
aacggttctaccatgactgagaagccattcacttccaacaccagtggaacttctgaacct
gtacctgtcgacagactcatgctgaacctactcagtgaacaaactgggtggattgctggt
taccatgaacatgaagctctcctccaagaaaatgaagaggaaaggcttacaaaggaggaa
caagacatggccttgtcagagtgggaggctttgaggaaaggtgtacgtgatcccgagaga
aaatcaaacatgactgcggttccagcagatcccaacgttgtgcggtcagtcaaggctgct
tcaagaagccggcaaccgcagcaacctaaggttaactccaacaaccaaaagaagtgcaac
aacttaacccacatgctaactctaagaagcgagggcacgaaagcagggtgcacaataacc
tgtaatgaatgtggccaggagatttgttgggagactctaaatagagacagaacgagatga
DBGET
integrated database retrieval system
