Setaria viridis (green foxtail): 117839003 Help Entry 117839003         CDS       T07951                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism svs  Setaria viridis (green foxtail) Pathway svs03040   Spliceosome svs04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:svs00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     117839003   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     117839003  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:svs03041]     117839003    04121 Ubiquitin system [BR:svs04121]     117839003    03400 DNA repair and recombination proteins [BR:svs03400]     117839003 Enzymes [BR:svs01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      117839003 Spliceosome [BR:svs03041]  Complex B   Other components    Prp19 complex     117839003  Complex C    Prp19-CDC5 complex     117839003 Ubiquitin system [BR:svs04121]  Ubiquitin ligases (E3)   U-box type E3    117839003 DNA repair and recombination proteins [BR:svs03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     117839003 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_SPT8 WDR90_beta-prop_4th NBCH_WD40 U-box Beta-prop_DCAF4 PEP5_VPS11_N PAN2_N zf-Nse RMC1_N WDR54 Beta-prop_NWD2_C PUMA_CC V_ATPase_I_N Motif Other DBs NCBI-GeneID:  117839003 NCBI-ProteinID:  XP_034575117 LinkDB All DBs Position 9:17201435..17209419 Genome browser AA seq 526 aa AA seqDB search MICAISGEVPDEPVVSKKSGLLFERRLIERYVEDHGKCPVTKEELTMDDIVPVKTNKVVK PRPLQAASIPGLLGIFQNEWDALMLSNYSLEQQLHTARQELSHALYQHDAACRVIARLKK ERDEARTLLAQAERQIPASVAAAAPAAVVSNGKRATEDEIGPDGKKIRPGINPVMIDELT ECNTMLSAQRKKRQVPPTLAPIDALERYTQISSHPLHKTNKPGILSMDIHPSKDIVATGG IDTNAVLFDRPSGQILCTLTGHSKKITTLKFVPRDGLFVTGSADKTVRIWQESENGNYNC IHTLKDHTAEVEAVTVHATQKYFVTASKDNSWCFYDISTGSCLTQVGEASGQEGYTSASF HPDGLILGTGTTDAVVKIWDVKTQSNVAKFEGHVGPVTAMSFSENGYFLATAAHDGVKLW DLRKLRNFRTFSPYDSDTPTNAVEFDFSGNYLAIGGSDIRVHQVANVKVEWNLIKTLPDL SGTGKVTSVKFGADAKYIAVGSMDRNLRIFGLPGDDQMEESNTAAE NT seq 1581 nt NT seq  +upstreamnt  +downstreamnt atgatctgcgcgatctccggcgaggtgccggacgagccggtggtgtccaagaagtcgggg ctcctcttcgagcggcggctcatcgagcgctacgttgaggaccatggcaagtgtccggtc accaaggaggagctcaccatggacgatattgtgccggtcaagaccaacaaggttgtgaag cctaggcctttgcaggctgcaagcattccaggactccttggaatttttcaaaatgagtgg gatgctctcatgctttctaattattctttggagcagcagcttcacacagcaagacaagaa cttagtcatgcgctctaccagcatgatgccgcctgccgtgttatagccagattaaagaag gaaagagatgaggctagaacacttttggctcaagctgagagacagattcctgcatcagtt gcagcagctgctcctgcagctgttgtttccaacggaaaaagagcaacggaagatgaaatt ggccctgacgggaagaagattcgtcctggtatcaaccctgtcatgattgatgaacttaca gagtgtaataccatgctttcagcacagcgtaagaaaagacaggttccaccaactctggcg ccgattgatgcacttgagagatatactcaaatcagtagtcatccccttcataagacaaac aaaccaggcattttgtccatggacattcatccttcaaaggacattgttgcaactgggggt atcgacacaaatgcagtgctgtttgatcggccatctggtcaaatcttgtgcacgcttact ggtcactcaaagaagataaccactttgaagtttgttccacgggatggactctttgtaact ggatctgcagataagactgttcgcatttggcaagagagcgagaatggaaactataactgc atccatacattgaaagatcatactgctgaggttgaagctgttacagtccatgcaactcaa aagtatttcgtgactgcttccaaggataactcctggtgcttctatgatatatcaacagga tcttgcctcacacaggttggcgaggcttcaggacaagagggatatacatctgcatctttc catccagatggtcttatccttggaacaggaactactgatgctgttgttaaaatttgggac gtgaagactcagtcaaatgttgcaaagtttgaggggcatgttggaccagtcactgctatg tccttctctgaaaatggttacttccttgctactgctgctcatgatggtgtcaagctttgg gatcttcggaaattgaggaattttaggaccttctctccctatgattcagacacgccgacg aatgctgtggaatttgattttagcggaaactatcttgccattggtggttcagacataagg gttcaccaagtagctaatgttaaggttgagtggaatcttatcaagacgttaccggattta tcaggaactggtaaagtaacttctgtgaagtttggagccgatgctaagtacattgccgta ggttctatggaccgcaacctacggatatttggactccctggagatgaccaaatggaggaa tcaaacacagcagctgagtga

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