Setaria viridis (green foxtail): 117839106
Help
Entry
117839106 CDS
T07951
Name
(RefSeq) ubiquitin domain-containing protein DSK2a
KO
K04523
ubiquilin
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117839106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117839106
03051 Proteasome [BR:
svs03051
]
117839106
Membrane trafficking [BR:
svs04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
117839106
Proteasome [BR:
svs03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
117839106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
STI1-HOP_DP
UBA_7
Dsc3_N
Rad60-SLD_2
TSC22
Motif
Other DBs
NCBI-GeneID:
117839106
NCBI-ProteinID:
XP_034575251
LinkDB
All DBs
Position
9:54598693..54603358
Genome browser
AA seq
536 aa
AA seq
DB search
MGGGDAGADPGAEAAAAQATLHIRCTNGSKFAVRADLGATVGAFKAIVAESCDVPAPQQR
LIYKGRILKDEETLASYGVETDHTIHMVRGAAPPPASTAPAANQETSSTAPASSPAAGLS
GLLQGLGGTGAANSGGLGLFGSGLPELDQMQQQLAENPNLMREMMNMPLMQNLMNNPDLM
RNIIMNNPQMRELIDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIESS
PEGFNMLRRMYETVQEPFLNATTMGGEGDRNPNPFAALLGNQGSNQARDPAANAPTTASD
PAAGSPAPNINPLPNPWGTNAGSAQGAARPPPASNTNTRSATAGGLGGLGSADLGSVLGG
GSDASFLSQVLQNPTMMQMMQNIMSNPQSMNQLLNINPNVRNMMESNTQLREMFQNPEFL
RQLTSPETLQQLISFQQSLVSQLGQQQAGQERTQSGTGAGNVNLNTLMNMFSGLGAGGGL
GVPNAPNVAPEELYATQLAQLQEMGFFDTQENLRALIATAGNVHAAVERLLGNLGQ
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgggcggaggggacgccggcgccgaccccggcgctgaggccgcggccgcgcaggcgacg
ctgcacatccggtgcaccaacggctccaagttcgccgtgcgggccgacctgggcgccacc
gtcggggcgttcaaggcgatcgtcgccgagagctgcgacgtcccggcgccgcagcagcgg
ctgatctacaagggccggatcttgaaggacgaggaaaccctagccagctacggtgtggag
actgatcatactattcacatggtacgtggtgctgctccaccaccagcatcaactgcacct
gcagccaaccaagaaacttcctctactgctcctgccagttccccagcagcaggtttgagt
ggcttgttgcaaggtctgggtggtacaggggctgctaatagtggagggttgggtttgttt
ggatctggcctcccagaattagaccagatgcaacaacagctagctgaaaaccccaacttg
atgagggaaatgatgaatatgccactcatgcagaatctaatgaataatcctgatctcatg
cgcaatataataatgaacaatcctcaaatgcgtgagctcattgatcgcaatccagatctt
gcccatgtcctcaatgatccaagtatcctgcgccagactgttgaagcagctaggaatcct
gaacttatgagggagatgatgcggaacacagatagagccatgagcaacattgaatcttca
ccagaaggtttcaacatgctccgccgcatgtatgaaactgtccaagagccttttctgaat
gcaacaacaatgggtggtgagggtgatcgaaatccaaacccatttgctgctcttctagga
aatcaggggtccaaccaagcaagggacccagctgcaaacgcaccaactacagcttcagac
ccggcagcagggtctccagctccaaacattaatccacttccgaatccctggggcacaaat
gctggatctgcccaaggagcagcaaggccccctcctgctagcaacacaaacacaaggagt
gctacagcaggtggtctaggaggattgggctcagcagatttaggaagtgtgcttggtggt
ggctctgatgcttccttcttgagtcaggttttgcaaaacccaactatgatgcagatgatg
cagaacattatgtctaatccccagtccatgaaccagttgctcaatatcaacccaaatgta
cgtaacatgatggaatcaaatacccagctgagagaaatgtttcagaatccagaatttctt
cgccagttgacgtctcctgaaacattgcagcaactaatttcattccagcaatccttggtt
tcacaacttggccaacaacaagctggacaggagcgtacacaatcaggcactggtgcaggc
aatgtcaacctcaacaccttgatgaacatgttcagcgggcttggtgctggtggtggccta
ggtgttccaaatgcccctaatgtggctccagaagaactgtatgcaacacagctagctcag
ctccaagaaatgggtttcttcgacacacaggagaacctccgggccttgatcgctaccgct
ggaaacgtccatgccgcagtggagcgacttcttgggaatttgggccaatag
DBGET
integrated database retrieval system
