Setaria viridis (green foxtail): 117839128
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Entry
117839128 CDS
T07951
Name
(RefSeq) cullin-4
KO
K10609
cullin 4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03420
Nucleotide excision repair
svs04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117839128
09124 Replication and repair
03420 Nucleotide excision repair
117839128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117839128
03400 DNA repair and recombination proteins [BR:
svs03400
]
117839128
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117839128
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
117839128
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
117839128
TCR (transcription coupled repair) factors
Cul4-CSA complex
117839128
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117839128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Pox_VLTF3
DUF808
Motif
Other DBs
NCBI-GeneID:
117839128
NCBI-ProteinID:
XP_034575283
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All DBs
Position
9:complement(3684116..3691621)
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AA seq
831 aa
AA seq
DB search
MSQPHAASKRPFSSTTASPSLTSPAPPLMKKAKHPAAASSSSAGTTEKNGIHLDAAVAAA
GGGGSGRTNGEEDTEMVLADQEDLPAPSAQASAGVAANLFRKKATLPQPSTSARKPLRIK
IGQPKLPKNFEEDTWAILKDAITAIFLKQKLSCDVEKLYQAAGDLCLHKLGANLYERIKK
ECEIHIAEKISALVGQSPDLVVFLSLVQRTWQDFCDQMLIIRGIALLLDVKYVKNVANIC
SVWDMGLQLFRKHLSLSPEIEHKTVTGLLRLIESERLGEAIDRTLLSHLLKMFTALGMYS
ESFEKPFLECTSEFYATEGVKYMQQSDIPDYLKHVESRLQEEHERCILYLEANTRKPLIA
TTEKQLLERHTSAIIEKGFTMLMDANRINDLSRMYNLFQRVNAVELLKLALSAYIRATGQ
GIIVDEEKDKELVPFLLDFKASLDKILEESFAKNEAFSNTIKDSFEHLINLRQNRPAELI
AKFLDEKLRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASI
DAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINDSFRQSSQARTKLPSGIEMSVHVL
TTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKE
LAVSLFQSVVLMLFNDAQKLSFLDIKDSTGIEDKELRRTLQSLACGKVRVLQKIPKGRDV
EDKDEFVFNEEFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRK
VLSHTLLIAELYQQLKFPVKPADIKKRIESLIDREYLERDRSNPQIYNYLA
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagccccacgccgcctcgaagcgtcccttctcgtccaccaccgcatccccctcc
ctgacctcccctgcgccgccgcttatgaagaaggccaagcaccccgccgccgcctcctcc
tcctccgctgggaccaccgagaagaacggcatacaccttgatgccgccgtcgccgccgcc
ggcggcggtggcagcgggcgaacgaacggcgaggaggacacggagatggtgctcgcggac
caggaggacctacccgcgcccagcgcgcaggcctccgcgggcgtcgccgccaacctcttc
cgaaagaaggccacgctcccgcagccgtcgacgtcggcccgcaagcccctccgcatcaaa
ataggtcaaccgaaactgcccaaaaatttcgaggaggatacatgggcgattttgaaggat
gctattacagctatttttctgaaacagaaactttcatgtgatgttgagaaactctatcag
gctgccggtgatctttgtctacacaagctaggagcaaacctatatgaacgaatcaagaaa
gaatgtgaaatacacatagccgaaaaaatatcagcactagtgggtcaaagcccagatttg
gttgtatttttgtctctggtccaaagaacatggcaagatttttgtgatcagatgttgatt
attcgtggtattgctttacttcttgatgtaaaatatgtcaagaatgttgcaaatatttgt
tctgtgtgggatatggggttgcagctcttccgcaagcatctatcactgtccccggagatc
gaacacaaaactgtaactggccttctcagattgattgagagtgagaggcttggtgaagca
atagataggacattacttagccatcttctgaagatgtttactgctctgggaatgtattct
gagagttttgaaaagcccttccttgaatgcacttctgaattttatgctacggaaggtgtt
aaatatatgcaacaatctgatattccagactacctgaagcatgtggagtcgaggttgcaa
gaagaacatgaaaggtgtattttatatttggaagctaacacgcggaagccactgattgca
actactgaaaagcaattgctggagagacatacatccgcaattattgagaaggggttcaca
atgcttatggatgcaaatcgtataaatgacctctcgaggatgtacaaccttttccagagg
gttaatgctgttgagctgctaaaactagctcttagtgcatatatacgggccactggccag
ggaattattgtggatgaagaaaaggataaagaattggttccatttcttctggattttaag
gcatccctggataaaatattggaagaaagttttgccaagaatgaggctttctccaatacc
ataaaagattcatttgagcaccttatcaatctacggcagaatcgacctgctgaattgatt
gcaaagtttcttgatgagaaacttcgagctggcaataaagggacctcagaagaagagctg
gagggtatcctcgacaaagttttggtcctgtttcggtttatacaaggtaaagatgtattt
gaggcattctacaaaaaggatctagctaagaggttgctgcttgggaagagcgcatcgata
gatgccgagaaatcaatgatcacaaaactcaaaactgagtgtggaagtcagtttaccaac
aagctggagggcatgttcaaggacattgaattatcgaaagaaataaatgattcgttccgg
caatcatctcaagctaggacaaagcttccctctggcattgaaatgagtgtccatgtgctt
acaacaggctattggccaacatatccaccaatggacgtgaaactcccgcacgaactgaat
gtgtatcaggatatatttaaagagttctatttgagcaagtacagtggaaggcgtttaatg
tggcaaaattctttgggacactgtgtcttgaaagcagactttcccaaaggcaaaaaggaa
cttgctgtgtcattatttcagagtgtggttttgatgttgttcaatgacgcacaaaaacta
agctttctcgacatcaaagattccactggcatcgaggataaagaattgagaagaacactg
caatcacttgcatgtggtaaagttcgtgttctccaaaagataccgaaagggagagatgta
gaggataaggatgagtttgtattcaatgaagaatttagtgctcctctctaccgcataaag
gtaaatgctattcagatgaaggagacagtagaagaaaacacaagcaccactgagagggtg
tttcaggaccggcagtatcaggtcgacgcggccatcgttcgaataatgaagacgaggaag
gtcctcagccacacccttctaatagctgagctttaccagcagctcaagttcccggttaag
ccagcggatatcaagaaaagaatcgagagcttgatcgaccgagagtacctggagcgagac
aggagtaacccccagatctacaactacctggcttga
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