Setaria viridis (green foxtail): 117839143
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Entry
117839143 CDS
T07951
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117839143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117839143
03012 Translation factors [BR:
svs03012
]
117839143
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117839143
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117839143
Translation factors [BR:
svs03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117839143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
ABC_tran
NACHT
ATPase
AAA_16
AAA_23
Dicer_dimer
ATPase_2
Myosin_head
Motif
Other DBs
NCBI-GeneID:
117839143
NCBI-ProteinID:
XP_034575298
LinkDB
All DBs
Position
9:5514114..5520806
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AA seq
1156 aa
AA seq
DB search
MRRGLRRGLGILLVPLPNAPSRPPPISLAALLLHPHRLNNGFSRRSFCSFPGGGRAVEQF
SDDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKR
MGLYSQTYGRVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLSL
DKSGGNTESGSEAAGKADNVNLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGV
KMLEFRKSLPAYKDKERLLAAIARNQVIVISGETGCGKTTQLPQFVLEAEIESGRGAFCN
IICTQPRRISAMAVAERVSTERGENLGESVGYKVRLEGMKGKDTHLLFCTSGILLRRLLS
DRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGA
PTIHIPGFTHPVRAHFLEDILERSGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITT
LVEDALKNSSFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDD
ISCLKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKAPPNVRKVVLATNMAEASIT
INDIVFVVDCGKAKETTYDALNNTPCLLPSWISRASARQRRGRAGRVQPGECYHLYPRCV
YDAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVEFLKMIGA
LDGNENLTDLGCYLSMLPVDPKLGKMLIMGSVFRCIDPILTVVAGLSVRDPFLLPQDKKD
LAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQF
SYILKDSGLIDSDANINNSLSHNQSLVRGIICSGLFPGIASVVHRENSMSFKTMDDGQVL
LYANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVAKGSMAGHLKM
LDGYIDFFMDPSLSECYLQLREELDKLIQKKLEDPNFDIHKEGKYILYAAQELTAGDLCE
GRFVFGRETSRAKLQSPEEEGKSSLIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEF
RAMVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTQTSGVKPQDEGDDSSPLDLTDSMLK
LLTRPRRHSKNNSRRR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcctgcgccgcgggctgggcatcctcctcgtcccacttcccaacgcaccc
agccgcccgccgcctatctctctcgcggctctcctcctccacccccaccgcctcaataat
ggcttctcccgccgctccttctgcagcttccccggcgggggccgcgccgtcgagcagttc
tccgatgacgagtacgaccacgagtacgaggacctccggccgtcgtcgtcggtggcgaac
atagacgagtggagatggaagctgagcatgctgcagcgcaacgccgaggagcaggagatc
atctccagggaccggagggaccgccgggactatgaccagatcgccaacctcgccaagaga
atggggctctacagtcagacgtacgggagggttatcgtcgcgagcaaggtcccactgcca
aactacaggccggacctagatgacaagcggccgcaaagagaggtggtgatcccgctgagc
ttgcagaggagagttgaaggtcttgtgcaggagcatctagaccgtgcactcttgtcactg
gataaaagcggtggcaacacggaaagtggttctgaggcggctgggaaagctgacaatgtg
aacctggacgagcagcatgattctctgcttgataggtcagtcatggagaagatacttcag
aggaagagcattcgaatgcgcaattttcagagaagttggcaggaatcacctgaaggtgtt
aagatgttagagtttcggaaatcgcttccagcatacaaggacaaagaaaggctcctagca
gccattgcacgcaatcaggttatagtaatttctggggagacaggatgtgggaaaacaaca
cagctgcctcaatttgtattggaggcggaaatagagtctggccgaggggccttttgtaac
ataatttgtacacagccacgaaggatatctgcaatggcagttgcagaaagagtatccact
gagagaggagagaaccttggtgaatcggttggctataaagttcgactggagggaatgaag
ggaaaagacacacatttgcttttctgcaccagcggcattttactaagacgattgctgagt
gaccgaaacttgaatggcgtgactcatgtatttgttgatgaaatacatgaaaggggcatg
aatgaagatttcctgttgattgtactgaaagatctattatcacggcgccgtgatttgagg
ttgatattgatgagtgctactctaaatgcggaactgttctctagttattttggaggggca
ccaactatccacattcctggattcacgcatccagtgagggcacattttctggaagatata
ttggagaggtcgggctacaagttgacttcaagcaatcaacttgatgattatggccaagat
aaagtctggaaaactcagaggcagctgctgcctagaaaaaggaaaaatcaaatcactaca
cttgtcgaggatgccctaaaaaattcaagctttgagacatatggttccaggacgcgagat
tctctagcaaattggaatcctgattgcattgggttcaacctcatagaggcggttctgtgc
cacatatgtcgcaaagagcgacctggtgctgttttagttttcatgactggatgggatgat
attagttgcttgaaggatcaactgaaagcacatccgttgttaggtgatccaaacagggtt
ttgctgcttgcatgccatggttctatggctactgctgagcagaggctaatttttgagaag
gcacctcctaatgttcggaaggtagtcctagccacaaacatggcagaagcaagtattaca
ataaatgatatcgtttttgttgtggattgtggtaaagcaaaggaaactacatatgatgct
ctgaacaataccccctgcttactcccctcatggatttcaagagcttctgcccggcagagg
aggggcagagctggccgtgtgcaacctggagaatgctatcatctttatcctagatgtgtg
tacgatgcattcgcagaatatcagcttccggagcttcttagaactcctttgaattcatta
tgtttgcagataaaaagtttgcaagttggcagcatcggagagttcctatcagctgcttta
cagcctcctgaaccactagctgtccaaaatgcagtggaattcctgaagatgattggcgca
ttagatggaaatgagaaccttactgatcttggatgttacctttccatgcttccagttgat
ccgaaactgggaaagatgcttataatgggctcagtttttcgctgcatagatcctatactt
actgtagtcgctggactgagtgttcgggatcctttcctgttgccacaggacaagaaggat
ttggcaggaactgcgaaatcaagattctcagcaaaggattatagtgaccatatggccctt
gttcgggcttatgaaggatggaaggatgcagagagagaagggtctgcttatgaatactgt
tggagaaatttcctttctgctcaaacactacaagctattcactcacttcggaagcaattc
agctatattttaaaggattctggtttgatagactctgatgcaaatataaataacagtttg
agccataatcaatcattggtccgtggcatcatatgttctgggctttttcctgggatagca
tctgttgtgcatcgagaaaactcaatgtcctttaagaccatggatgatggccaagttctt
ctttatgctaattcagtgaatgcaaagtaccagaccatcccatatccatggttggtcttt
ggtgagaaggtgaaggtgaatgctgtcttcatccgtgattcaaccggagtatcagactcc
atactgatcttatttggtggtgctgttgcaaaaggaagcatggctgggcacttgaagatg
ctcgatgggtacattgatttctttatggatcccagcctttccgaatgctacttgcaactt
agagaagaacttgataaacttatacagaagaagcttgaagacccgaactttgacatccac
aaggaaggcaagtacatcctatacgccgcgcaggagctcaccgccggcgacctatgcgag
gggcggttcgtgttcgggcgtgagacgagccgggccaagctccagagccccgaggaggag
ggcaagagcagcctgatcaaggatgggatgaaccccaagagcctgctgcagacgctgctg
atgcgcgcggggcacaccccgcccaagtacaagacgaagcacctcaagacgaacgagttc
cgggccatggtggagttcaaggggatgcagttcgtggggaagccgaagcggaacaagcag
ctggcggagcgggacgcggccatcgaggcgctcgcgtggctgacgcagacctccggcgtg
aagccgcaggacgagggcgacgactcctcgccgctggacctgacggacagcatgctaaag
ctgctcacgaggccgaggcggcactcgaagaacaactccaggagacggtga
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