Setaria viridis (green foxtail): 117839199
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Entry
117839199 CDS
T07951
Name
(RefSeq) histone-binding protein MSI1 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03082
ATP-dependent chromatin remodeling
svs03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117839199
03083 Polycomb repressive complex
117839199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
svs03036
]
117839199
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
117839199
Histone modification proteins
HAT complexes
HATB complex
117839199
HDAC complexes
Sin3A-HDAC complex
117839199
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
117839199
PRC2.2
117839199
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
117839199
Heterochromatin formation proteins
Other heterochromatin formation proteins
117839199
Chromatin remodeling factors
NuRD complex
117839199
NuRF complex
117839199
NuRF complex (fruit fly)
117839199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
EIF3I
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
eIF2A
Beta-prop_HPS5
WD_LRWD1
MIOS_WD40
Beta-prop_RIG_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
117839199
NCBI-ProteinID:
XP_034575367
LinkDB
All DBs
Position
9:10333191..10339885
Genome browser
AA seq
431 aa
AA seq
DB search
MPKAGGGAADEEEFRAEVEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRA
EPPGKDHSVQKMILGTHTSDNEPNYLMLAQVQLPLDDAEADARHYDDDHADIGGFGAASG
KVQIVQQINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRL
KGHNSEGYGLSWSIFKEGHLLSGSDDAQICLWDIKANSKNKSLDALQIFKHHDGVVEDVA
WHLRHEYLFGSVGDDHHLLIWDLRSPAPTKPVQSVVAHQGEVNCLAFNPFNEWVVATGST
DKTVKLFDLRKIDKSLHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDQEQ
TPEDAEDGPPELMFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDD
LPISDEPPKTS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggccggcggcggcgcggcggacgaggaggagttccgcgccgaggtggaggag
cgcctcatcaacgaggagtacaagatctggaagaagaacacccccttcctctacgacctc
gtcatcacgcacgcgctcgaatggccctccctcaccgtgcagtggctgcccgaccgcgcc
gagccgccggggaaggaccactccgtccagaagatgatcctcggaacgcacacctccgac
aacgagcccaactacctcatgctcgcgcaggtccagctgcccctcgacgacgccgaggcc
gacgcgcgccactacgacgacgaccacgccgacatcggggggttcggcgccgcctccggc
aaggtgcaaattgttcagcagataaatcatgatggagaggtcaatcgggctcgctatatg
ccccaaaattcatttataattgctactaaaacagttagtgcagaagtatatgtctttgac
tatagcaagcacccatcaaagcctccactggatggtgcatgcaaccctgatttacggctg
aagggacataattctgaaggatatggcttatcatggagtatttttaaagagggacatttg
ttgagtgggtccgatgatgctcaaatttgcttatgggacattaaagcaaatagtaaaaac
aaaagtcttgatgccctgcagatttttaagcatcatgatggcgtcgttgaagatgttgct
tggcatttgaggcatgagtacttatttgggtcagttggtgatgatcatcatcttctgatt
tgggacctgcggtctcctgcccctactaagcctgttcagtcagtggtggcacaccagggt
gaggtgaactgcctggctttcaatccgttcaatgaatgggttgttgcaactggttctact
gacaagactgtcaaattatttgatcttaggaagatcgataagtctctacacacctttgac
tgtcacaaagaggaagtatttcaagttggatggaacccgaagaatgagactatacttgca
tcctgttgcctgggcagaagactcatggtctgggacctgagcaggattgaccaagaacaa
acaccagaggatgcagaagacggccctcctgagctcatgttcatccatggaggccatacc
agcaagatctctgatttctcctggaacccctgcgaggactgggtgattgctagcgtcgct
gaagacaacatcctccagatatggcagatggctgagaacatctaccatgatgaagatgat
ctgccgataagtgacgaaccaccaaagacatcttga
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