Setaria viridis (green foxtail): 117839447
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Entry
117839447 CDS
T07951
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117839447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117839447
03012 Translation factors [BR:
svs03012
]
117839447
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117839447
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117839447
Translation factors [BR:
svs03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117839447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
NACHT
ABC_tran
AAA_19
BEX
Motif
Other DBs
NCBI-GeneID:
117839447
NCBI-ProteinID:
XP_034575674
LinkDB
All DBs
Position
9:16961705..16970777
Genome browser
AA seq
1037 aa
AA seq
DB search
MLLHSSACRGSHLLSSCSSISGRFLHLPLVPAPLKTLGALRTLAAMSYRGGRGGGGPNSH
RGRGRGGGGGGRGGRGGGGGGGRGEQRWWDPQWRAERLRQMHGEVEKVDENEWWNRIGQL
REGTQQELVVKRNFGRDGQNILADMAQRQGIYFNAYNKGKTLVFSKVPLPDYRADLDERH
GSTQKEIKMSNQTERRVEDLLSRSKLNTSDSASTSNVSIRQSLPSTSSSVVERATDVDKE
KLSSQLRDLQNSRKMAASARSMQSFREKLPAFNMREGFLKAVAANQVLVISGETGCGKTT
QLPQFILEEEIDNLCGADCSIICTQPRRISAISVAARVAAERGEELGETVGYQIRLESKR
SAQTRLLFCTTGVLLRRLAQEPDLVGVSHLLIDEIHERGMNEDFLIIILRDLLPRRPDLR
LVLMSATINAELFSKYFGDASIMHIPGFTFPVAEFFLEDVLEKTRYKIKSEHDSSAGSSR
RKRLSSVKSDPLSDLFEDIDIDKEYGNYSITTRQSLEAWSAAELDLSLVESTIEYICRYE
AEGAILVFLTGWDEISKLLDKIKGNTFLGSSNRFLVLPLHGSMPTVNQREIFDRPPANMR
KIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGR
VQPGFCYRLYPKVIHDAMPQFQLPEILRTPLQELCLTIKSLQLGAVSSFLAKSLQPPDPL
SVNNAIELLKTIGALDDMEELTSLGRHLCTLPLDPNLGKMLLMGSVFQCLDPVLTIAAAL
AYRNPFVLPIDRKEEADAVKRSFAGNSCSDHIALLKAFVAWNEAKRSGRERSFCWENFLS
PMTLKMMDDMRNQFFDLLSDIGFVSKTRGVKAYNQYGSDLEMVCAVLCAGLYPNVVQCKR
RGKRTAFYTKDVGKVDIHPSSVNAFVNQFPLPYLVYSEKVKTASIYVRDSTNISDYALLL
FGGSLSPSKTGEGIEMLGGYLHFSAPKRTIELIQRLRGELDKLLQRKIEEPGVDIFSEGM
GVVAAAVELLHSQNEYH
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgctcctccactcttccgcctgccgcggcagccacctcctctcctcctgtagcagcatc
agcggccggttcctccatctccctctcgtgcccgcccctctcaaaaccctaggcgcgctc
aggacccttgccgccatgtcgtaccgcggcgggcgcgggggcggcggtcccaactcccac
cgcgggcgtgggcgtggcggcggcggcggaggtaggggaggccgcggcggcggcggcggc
gggggacgcggggagcagaggtggtgggacccgcagtggcgcgcggagcggctccggcag
atgcatggggaggtggaaaaggttgatgagaatgaatggtggaacaggattgggcaatta
agagaagggacccaacaggagctagtagtcaagcggaattttggacgggatggacagaat
atacttgcagacatggcccagagacaagggatttactttaatgcgtacaacaaagggaag
acacttgttttcagtaaggttccactacctgattatcgagcagatcttgatgagaggcat
ggatcaactcaaaaagagattaagatgtctaatcagacagagaggcgagtggaagatctc
ttatccaggtcaaagttgaataccagcgattctgcaagcacttctaatgtatcaataagg
caatctttgcctagcacatcctcatcagttgttgaacgagcaacagatgttgataaagaa
aaactcagttctcagcttagggatttgcagaattcaaggaagatggcggcaagtgctaga
tcaatgcaatctttcagggagaaattacctgcattcaacatgagagaaggatttctgaaa
gcagtagcagctaatcaggttctggtcatatctggtgagacaggttgtggtaaaacaacc
cagcttccacagttcattctagaagaagaaatagataacctttgtggtgctgattgcagc
ataatctgtactcagccccgccgtatatctgccatatcagtagcagcaagagtagctgct
gaaagaggtgaagagcttggtgagactgttgggtaccagattcgcctagaatcaaaacgg
tctgcacaaacacgactgctgttctgcactactggagttttgcttagaagactggctcaa
gagccagacttagttggtgtaagtcatttactaattgatgagattcatgaacgtggaatg
aacgaagattttctgatcataatactgcgtgaccttctaccaagacgtccagaccttcgc
cttgtattgatgagtgcaactataaatgcagaactgttttccaagtactttggagatgct
tcaataatgcacatcccggggttcacttttcctgttgctgagttttttctggaagatgtc
ttagaaaagactcgttacaagatcaagtccgaacatgatagttctgcaggtagttcgaga
agaaagaggctttcgtcagttaagagtgatccattatctgatctttttgaggacattgac
attgataaggaatatggaaattacagcattacaacgaggcagtcccttgaagcttggtct
gctgctgaactagatttgagccttgtagaaagtacaattgagtatatttgtcgctatgaa
gcagaaggtgcaatccttgtgttccttactggctgggatgaaatttcgaaacttcttgac
aagattaaagggaatactttccttggaagttcgaacagattccttgttcttcctttgcat
ggctctatgccaactgtcaatcagcgtgaaatttttgacagaccgccagcaaatatgaga
aaaattgttctagcaaccaatattgcggagagtagtattacaatagatgatgttgtctat
gtaattgattgtggtaaggccaaggaaacaagctatgatgccttgaacaagcttgcatgc
cttctaccatcgtggatatcaaaagcttctgctcatcagaggcgaggccgtgcaggccgc
gttcagccagggttttgctataggctttatccaaaagtcattcatgatgcaatgccgcag
tttcaattgcctgaaattcttaggactcctttgcaagaactatgccttactatcaaaagc
ttacagcttggagctgtatcttcctttttggcaaagtcactgcagcctcctgatccgctt
tctgtcaataatgcaattgagcttcttaaaaccattggcgcgctcgatgatatggaggaa
ctcacatctctaggacgacatctctgtacacttccactggatccaaaccttggaaaaatg
ctgcttatgggatccgtattccagtgcctggacccagtattaacaattgctgctgctctt
gcataccgtaatccatttgtgctcccaattgatagaaaagaagaagctgatgctgttaaa
agatcatttgctggtaactcctgcagtgatcacattgcccttcttaaggcgtttgtagca
tggaacgaagcaaaacggagtggcagggaacgttctttctgttgggaaaatttcctgtcc
cccatgaccctgaagatgatggatgacatgcggaatcaattttttgatctactatctgat
attgggtttgttagcaagacaagaggagttaaggcatataaccagtatggtagtgatctg
gagatggtttgtgctgtattgtgtgctgggctttacccgaatgttgtacaatgtaaaagg
cgaggcaagaggacagccttctacaccaaagatgtgggaaaagtggacattcatccttca
tcagtcaatgcatttgtgaaccaatttccattgccttacttggtgtatagtgagaaggtt
aagacggctagcatttatgtgagggactcaacaaacatatcggactatgcccttttactt
tttggtggttcccttagtccaagcaaaactggagaaggcattgagatgctggggggttat
cttcatttctcggccccaaagcgtaccatagagttgattcagagattaagaggtgaattg
gacaaactcctccagaggaagattgaggaacctggagttgacatcttttcggaaggaatg
ggtgttgtggcggcagctgtagaactgttacacagtcaaaatgagtaccactag
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integrated database retrieval system
