Setaria viridis (green foxtail): 117839703
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Entry
117839703 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117839703
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117839703
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Suf
TPR_15
Motif
Other DBs
NCBI-GeneID:
117839703
NCBI-ProteinID:
XP_034575995
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Position
1:38735810..38745175
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AA seq
1154 aa
AA seq
DB search
MEPSPEPSPPVTTATFPAAGEGHEQHLSTNSSSLFPLFPLAASTAQSQWLSNPSFSFDAS
SLNIPTTTSSSLPTPLSPSSEDDAPPAPAPAKYDLVPSETDSDDDRGSRSKGRGRKKRRR
EKERYDGAAASRKAGVRAWAGSDMKPAKDYYVDAKGDHDNLAFGSLYRMDVARYRSQSML
EARGLNRSMFLNRRFGSSHIDLDSDLDGLDNKVRAGGRYYSAKNAVFERNKGFKHLKVMK
GDISAMLAEDFVPFDAQSVPVKSTTVEQELEESWEDEILRRTREFNKMSRERPHDEKVWL
AFAQFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLLYLLKSYGERDSTENL
LVKWERILTKHPDSCKLWKQYLLLCQGEFSRFKVSEVRKSYVYAVQALSAACTKLCRQVN
ENVDPKSQSSSLAQLELGLVDIFVNLCRFEWQTGHRELATGLFQAQMEFSLFSPPLYLTT
SSKQRLFEHFWNSGGARIGEDGALGWSAWLAKDEESRQNLAAQENSQETETGGWSGWFDP
SVGNTDTNKSPEPSTDGNDAEDLDAEDTPAQDDVESLLKKLGIDVDAESNSEVKDAETWN
RWASMELSRDNEQWMPLHEKSGLLHSGDVPSGEDNVQLSRVILFEDVTEFLFSLSSEEAR
FSLICQFIDFYGGKISRWTSTNSSSWLDRILSLETITDDILEDLSAVSDIVNKNQDSNSC
KLESLLGSMHDLSQRPGLAKFLRNAILLLLDVFPRNHVLEEAILVTTEMFAAKENSSSKA
NTSRSLAKNLLKKDRQDFLLCGIYGRTEAMHRNFEQARKIFDMALLSTEATTGVNCEDLR
KKVPILYLWYAEMEIAVSTSRNNSDSMHRAIYILSCLGSNIKYAPFIGPISRPQVLRARQ
GFKEQIRSLRSGFASGGIKEESVALICSASLFESMTSGYSSGLEVIEEIFPMALSDSSHN
SEFEDLWVYYIKLLQKNLKRLSLSRIWPSVSQGVHKYPYNPKSYSAMLTLSYLYSVSNNL
RLTLDKCSQRDPSIITLLFALSFEWSKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAY
EAEKACNASAARRVFFRAIHACPWSKRLWLDGFQKLSSILTLKELSDLQEVMRDKELNIR
TDIYEILLQDETDT
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggaaccctcgccggagccttccccgccggtcaccacggccaccttccccgccgccggc
gaaggacacgagcagcacctgtctacgaactcatcttccctattcccacttttccccctc
gccgcgtccaccgcgcaatcccagtggctctcaaaccctagcttctccttcgatgcctcc
tccctgaacattccgactaccacctcgtcgtcgctaccgacgccgctaagcccctcgtcc
gaagatgacgcgccgccggcgcccgcccctgcgaagtacgacctggtgccttcggaaacg
gactccgacgatgacaggggatcgcggagtaaggggagggggaggaagaaacggagacgg
gagaaggagcggtatgatggggcagcggcgtcgcggaaggctggggtccgtgcttgggct
gggtcagatatgaagccggccaaggattactacgtcgacgcaaagggcgaccatgataac
ctggcgtttggatccctatacagaatggatgttgcccgctacagatctcagagcatgctg
gaggcacgtggtttgaatcgatctatgtttttgaaccggaggtttggttcatcacatatt
gatttagattcagacttggatggactggataacaaagtaagagctgggggtcgctactat
tctgcaaaaaatgcagtttttgaaagaaataagggtttcaaacacctgaaagtgatgaag
ggagatatctctgcaatgcttgctgaagattttgtcccctttgatgcacaatcagttcct
gtgaaaagcacaacagtggaacaggagctggaggaatcttgggaagatgaaatacttcgg
aggacaagggaatttaataagatgtctcgggagcgtcctcacgatgaaaaagtttggttg
gcctttgctcaatttcaggacaaagttgctagtactcagccacaaaaggctgctcgtttg
caaactactgaaaggaaaattagcatattggagaaggctgtggagcttaatccagacaat
gaggaattgttgctttaccttctgaagtcatatggtgagagggacagcactgagaatctc
ttggttaaatgggaacgaatacttacgaagcacccagatagttgtaagttgtggaagcag
tatctgcttctatgtcaaggggagttctccagattcaaagtttctgaagtacggaagtcc
tatgtgtatgctgtacaagctctgtctgcagcatgcaccaagctatgtaggcaggttaat
gaaaatgtggatcccaagtcacaatcttcttccttagctcagctagaactgggtttagtg
gatatatttgtgaatctgtgccgatttgagtggcagacaggacatcgagaattagcaact
gggctatttcaggcacaaatggagttcagcttattctcccctcccctttatctgaccaca
agtagtaagcaaagactctttgaacacttctggaacagtggtggtgccagaataggggaa
gatggcgctcttggatggtctgcatggttagcaaaagatgaggagagtagacaaaacttg
gctgcacaagaaaattcacaagagactgaaacaggaggctggagtggctggtttgatcct
tctgttggaaacactgacacaaacaaatcaccggaaccatcaactgatggaaatgatgca
gaagaccttgatgctgaagatacacctgcacaagatgatgttgaatccttactgaaaaaa
cttggcatcgatgttgacgcagagtctaatagtgaagttaaagatgcagaaacttggaat
agatgggcctcgatggagttgtcaagagataatgaacaatggatgcctcttcatgaaaaa
tctggattgcttcattctggtgatgttccatctggagaagacaatgttcagctttctaga
gtaatcttgtttgaggacgtaaccgagttcctgttttctttatcttcagaggaggcccgc
ttttctctgatttgccaatttattgatttttatggtggcaaaatttcaagatggacctcc
acaaacagttcgagttggcttgatagaattttgagcttagagacgatcacagatgacatt
ctcgaagatctaagtgctgtatctgacattgtcaacaagaaccaagattcaaatagttgt
aagttggaatcattattgggaagtatgcacgacctttctcaaagacctggcctggcgaag
ttcctcagaaacgcgatactgcttttgcttgatgttttccctcgtaatcatgtcttggag
gaagctattcttgttactaccgaaatgtttgctgctaaagagaattcttcctctaaagct
aatacatcgcggtctttggcaaaaaatctgttgaagaaagacagacaggattttttgctt
tgtgggatatatggacgaactgaggctatgcacaggaactttgaacaagcaaggaagata
tttgacatggcgctattatctacagaagcaactactggggtaaactgtgaagatcttagg
aagaaggttcccatcctttatctttggtatgctgagatggagatagcagtgtccacttca
agaaacaattctgactcaatgcatcgtgcgatttacattctatcatgcttagggagtaat
ataaaatatgctcctttcattggccctatttcaaggcctcaggtcttgagggcccgacaa
gggttcaaagagcagattagaagcttacgatctggatttgcttctggtggtataaaagaa
gaatctgttgctctgatatgctcagcttctttgtttgaaagtatgacatcgggttattct
tcaggtcttgaagtgatagaggagatctttcctatggcactttcagatagcagtcataac
tcggagtttgaggatttgtgggtgtactacatcaaattgcttcagaaaaatcttaaacga
ttgagtctctcaaggatctggccaagcgtgtcacaaggagtgcacaaatacccgtacaat
ccaaaatcatattcggccatgttaaccctgagctatctttacagtgtatcgaacaatctc
cgtctcacactcgacaaatgtagtcaaagggacccttccatcatcaccttgctctttgct
ttgtcctttgaatggagtaaagcaggatctgacaatagaatacacagtctgtttgagaga
gctctagctgatgataagttgcagaaatctgttctgttgtggcgctgttatctagcttat
gaggcagagaaagcgtgcaatgcttctgcagcacgacgtgtattcttcagagctatacat
gcctgcccatggtctaaaaggttatggcttgacgggttccaaaagttgagctcgattctt
acactaaaagagttatcagatctccaggaagtgatgcgtgacaaggaattaaacatccgc
actgacatctatgagatactcttgcaagatgaaacagacacatga
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