Setaria viridis (green foxtail): 117839784
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Entry
117839784 CDS
T07951
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
117839784
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
svs04040
]
117839784
Ion channels [BR:
svs04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
117839784
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Paralog
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Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
117839784
NCBI-ProteinID:
XP_034576096
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Position
1:38775136..38784813
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AA seq
765 aa
AA seq
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MTDQERDDVPMLLRNVELPRFPLRSTSMCIPVRDDEYEEGTFVPHTGPLFIQPPTQTTSG
SPFTSRDAPDRLPRPSQGKPVSKPQAVMPEQTRGTRWSYSGQVPKNEHLLMSGPLGQCDN
PDCVNCPPACKNKRHFHRGSNAEDNKLHNILYGYGGGWKKKIEQILSRIPIMNPHAKPVQ
HWNQFFVISCLIAIFIDPLFFFLLSVEQDNKCIVLNWDFATALAVLRSVTDAIYFLHMLL
QFRLAYVAPESRVVGAGDLVDEPKKVAIHYLRGYFLLDFFVVLPLPQVMILLVIPKYVGL
SGANYAKNLLRATVLLQYVPRIIRFVPLLDGQSANGFIFESAWANFVINLLMFVLAGHVV
GSCWYLFGLQRVNQCLRDACSASTIPYCDTFIDCGRGVGSGLYRQQWFNDSGAAACFNTG
NGATFQYGIYGQAVLLTTEESAVKRYIYSLFWGFQQISTLAGNLVPSYFAWEVLFTMAII
GLGLLLFALLIGNMQNFLQALGRRRLEMQLRRRDVEKWMSHRRLPEDLRRRVRRAERFTW
AATQGVNEEELLSNLPEDIQRDIRRHFFRFLNKVRLFTLMDWPILDAICDKLRQNLYISG
SDILYQGGPVDKMVFIVRGKLESVSADGSKAPLHDGDVCGEELLTWYLENSSVNRDAGKI
KFQGMRLVAIRTVTCSTNVEAFVLRASDLEEVTSQFARFLRNPRVQGAIRYESPYWRTIA
ATRIQVAWRYRKRRLKRAEQSRLNEESYPSYSITAFDSFRRGQRG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaggagagagatgatgttcctatgttactaagaaatgttgaactaccaaga
tttcctctaagaagcacttcaatgtgtataccagtaagggatgatgaatatgaagaaggc
acctttgtaccccatactggtcctttattcattcagccaccaactcagacaacatcgggc
agtccatttaccagtagagacgcaccagataggctgcctagaccttcacaggggaaacca
gtcagcaagccacaggcagtcatgccagaacaaaccagaggaactaggtggtcttacagt
ggacaagtgccaaagaatgaacacctactgatgtctggacctttgggacaatgtgataat
cctgattgtgtcaattgccctcctgcttgtaaaaataaaagacatttccacagaggttcg
aatgctgaagacaataagcttcataatattctttatggttatggtggtggatggaagaaa
aagatcgagcaaattctttcacgcattccaattatgaacccacatgcaaagcctgttcaa
cactggaatcaattcttcgtgatatcatgcctgattgccattttcatcgatccactgttc
ttcttcctattatcagtagagcaggataataaatgcatagtgttaaactgggattttgct
acagcacttgctgttttgagaagtgtgaccgatgctatttatttcctccacatgctgctt
caattcagattggcttatgttgccccagagtcacgtgtggtgggagctggagacttggtt
gatgagccaaagaaagttgctatccattatcttcgtggttactttttacttgattttttt
gttgtgcttccactccctcaggtgatgatactgctagttatccctaaatatgttgggtta
tcaggtgcaaactatgctaagaatttattgcgtgccactgttcttcttcaatatgtgccc
cgtatcatcagatttgtaccgctacttgatggtcagtccgccaatggattcatattcgag
tcagcatgggctaattttgtgatcaaccttctaatgtttgttttggcgggacacgttgtt
ggttcatgttggtatctctttggcttacagagggttaaccaatgtctacgagatgcttgt
tctgcatcgaccattccttattgtgatacttttatagactgtggacgtggcgttgggagt
ggactgtacagacagcagtggttcaatgactcaggtgcagcagcttgttttaacactgga
aatggtgctactttccaatatggaatctatgggcaggctgttttactaactacagaagaa
agtgctgttaaacggtatatatattcattattttgggggtttcagcaaataagtacctta
gctggcaaccttgtcccaagttactttgcatgggaagttctgttcacgatggctattatt
ggtttgggactgttgctttttgcattacttatcggaaacatgcaaaactttctccaagct
cttggaagacggagattggaaatgcaacttaggcgccgcgatgttgaaaagtggatgagc
cataggcggttgcctgaagatttgagaaggagggttagacgagcagaaaggttcacctgg
gcagctactcaaggagtgaatgaagaggagcttttgagtaatttacctgaagatatccag
agggacatacgtcgtcatttctttagattccttaataaggtccgattgttcaccttgatg
gattggcctatcttggatgctatctgtgacaaattaagacaaaacttatatatcagtgga
agtgacattctttatcaaggtggtcctgttgacaagatggtcttcatagtgagaggtaag
ctggaaagcgtcagtgcagatggaagcaaggctccgttacatgatggagatgtatgtgga
gaggagctcctcacatggtacttggaaaactcatcggtgaatagagatgctgggaaaatc
aaatttcaaggcatgcggttggttgctatacgtacagtaacatgttcaacaaatgttgaa
gcttttgtactcagagcaagtgatctcgaagaagtcacctcgcaatttgcacgatttttg
cgtaatccacgagtgcagggagcgatcaggtacgaatccccctactggcgaactattgct
gcaactcgaattcaagttgcatggaggtataggaaaaggcggctgaagcgagctgagcag
tcaaggctgaacgaggagtcttacccctcgtactcgatcacggcgtttgattcttttcga
cgtggacagaggggatga
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