Setaria viridis (green foxtail): 117839821
Help
Entry
117839821 CDS
T07951
Name
(RefSeq) polygalacturonase ADPG2
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00040
Pentose and glucuronate interconversions
svs01100
Metabolic pathways
Module
svs_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117839821
Enzymes [BR:
svs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
117839821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
117839821
NCBI-ProteinID:
XP_034576139
LinkDB
All DBs
Position
9:complement(2495460..2497342)
Genome browser
AA seq
444 aa
AA seq
DB search
MASRKPLQLLFFLALLFLSGGALAGAAAGSTTTNGTASAAGAAAPAAITRAGGIRSLASS
SPSSQGGGVFSLDRYGARGDGRHDDTRALAKAWKAACASPRPAVVLVPGGKRYLLKLVRL
AGPCKSSVVLTVKGTLVASPNRADWSDRDRRHWIVFSAVDKLTVNGGGAVDGNGETWWKH
SCKINKAMPCKEAPTALSFHYCTGLRVQDLKIVNSQQIHMSIEDCTNVQLAGLSITASGT
SPNTDGIHITRSKDVQVTNCKIKTGDDCMSIENGTHNLYVSKVVCGPGHGISIGSLGDDN
SRAEVSGITIDTVQLYGTTNGARIKTYQGGSGYAKDITFQNMIMDNVKNPIIIDQNYCDK
DKPCKAQGSAVEVSNVVFKNIRGTTVTKDAIKLNCSKNVPCHGITLQNIDLKMEGGDGAA
ESTCQNAKWRKSGTVRPQPCTSKN
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccgcaagccgctgcagcttttgttcttcctcgcgctgctcttcttgtccggc
ggcgccctagcaggtgctgccgcgggcagcacgacgaccaacggcaccgcctcggccgcc
ggagctgccgcgccggctgccatcactagggccggcggcataaggtccctggcgtcgtcg
tcgccgtcgtcccaaggcggcggtgtgttcagcctcgaccgctacggcgcgcgcggcgac
ggacggcacgacgacacgcgggcgctcgccaaggcgtggaaggcggcgtgcgcctcgccg
cggccggccgtcgtgcttgtccccggcggcaagcgctacctgctcaagctcgtcaggctc
gccgggccatgcaagtccagcgttgtgctgacagtgaagggcacgctggtggcgtcgccg
aacagggccgactggagcgacagggacaggaggcactggatcgtgttcagtgccgtcgac
aagctcaccgtcaatggcggcggcgccgtcgacggcaacggcgagacgtggtggaagcac
tcgtgcaagatcaacaaggccatgccgtgcaaggaggcgccaacggccttgtcattccac
tactgcacaggtttgagagtgcaggacctgaaaattgtgaacagccagcaaatccacatg
tcgatcgaggattgcaccaacgtacagttggcaggcctgtccatcacagcgtccggcacg
agcccgaacaccgacggcatccacatcacccgcagcaaggatgtgcaggtcacgaactgc
aagatcaagactggggatgattgcatgtccatcgagaacgggacgcataatctctacgtc
tcgaaagttgtatgtgggccagggcacgggattagcattggaagtttaggagatgacaac
tctagagctgaagtctccggcattaccatagacacggtgcaattgtacggcacaaccaat
ggagcacgcatcaagacgtaccaaggagggagtggttacgccaaggatatcacattccaa
aacatgatcatggacaatgtcaagaacccgataatcatcgaccaaaactactgcgacaag
gataagccatgcaaagctcaggggtcagcggtggaggtcagcaacgtggtgttcaagaac
atcagggggacaaccgttaccaaggacgccatcaagctcaactgcagcaagaatgtcccg
tgccatggcatcaccctgcagaacattgacctgaagatggagggcggcgatggtgccgca
gaaagcacatgccagaacgccaaatggagaaaatccggaacggttcgcccgcagccgtgc
acctccaaaaactag
DBGET
integrated database retrieval system