Setaria viridis (green foxtail): 117839824
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Entry
117839824 CDS
T07951
Name
(RefSeq) TATA-box-binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117839824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
117839824
03021 Transcription machinery [BR:
svs03021
]
117839824
Transcription factors [BR:
svs03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
117839824
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117839824
RNA polymerase III system
TFIIIB
117839824
RNA polymerase I system
SL1/TIF-1B
117839824
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
WHIM1
Motif
Other DBs
NCBI-GeneID:
117839824
NCBI-ProteinID:
XP_034576143
LinkDB
All DBs
Position
9:complement(13416461..13418701)
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AA seq
141 aa
AA seq
DB search
MRIRDPKTTALVFASGKIVCTGAKSEEHSRLAARKYARIVQKLGFSARFKDFKIQNIVGS
CDVKFPIRLEGLALASGIFANYEPEIFPGLIYRMADPKIVILVFVSGKVVLTGAKVRDEI
YTAFENIYPMLVQFRKRQQYG
NT seq
426 nt
NT seq
+upstream
nt +downstream
nt
atgaggataagggatcccaagacaacggcactggtatttgcttcagggaagattgtttgc
acgggagcaaagagcgaagagcattcaaggcttgccgcgaggaagtatgcgcgaattgtc
caaaagctcggcttctcagctcggttcaaggatttcaagatccagaatattgttgggtca
tgtgacgtcaaatttcctattcgtctggagggccttgctttggccagtggcatttttgcc
aattatgagccggagatcttccctgggctgatctaccgcatggcggaccccaagatcgtg
atcctcgtcttcgtctctggcaaggtcgtcctcaccggagccaaggtccgggatgagata
tacaccgcgtttgagaacatatacccgatgctcgtgcagttcaggaaacggcagcagtat
ggatag
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