Setaria viridis (green foxtail): 117839996
Help
Entry
117839996 CDS
T07951
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03030
DNA replication
svs03420
Nucleotide excision repair
svs03430
Mismatch repair
svs03440
Homologous recombination
svs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117839996
03420 Nucleotide excision repair
117839996
03430 Mismatch repair
117839996
03440 Homologous recombination
117839996
03460 Fanconi anemia pathway
117839996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
117839996
03032 DNA replication proteins [BR:
svs03032
]
117839996
03400 DNA repair and recombination proteins [BR:
svs03400
]
117839996
Transcription factors [BR:
svs03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117839996
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117839996
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117839996
MMR (mismatch excision repair)
117839996
DSBR (double strand breaks repair)
HR (homologous recombination)
117839996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF223
CDC24_OB3
TMEM219
Motif
Other DBs
NCBI-GeneID:
117839996
NCBI-ProteinID:
XP_034576343
LinkDB
All DBs
Position
1:complement(38910587..38914014)
Genome browser
AA seq
653 aa
AA seq
DB search
MAAARLTPNAVTATLAGDTNLKPVVQVVDLRSIAVSGPHAAGPRFRAIISDGIATTQALF
ASQLCDLARSGLVRRGAIVQLLDYIVNEVQGRRAMVILNMEVLVPECEIIGNPTLPPESG
VSNSNSMRADQFNGTPGSTAGSTLSTVARSTNNALVIQRSMAGNSSNMIPRPSDNAQVFQ
PTVQPSYRPTPNYRNHGTIMKNDAPARIIPISILNPYQGRWAIKARVTAKGEIRRYHNAK
GDGKVFSFDLLDSDGGEIRATCFNALVDRFYEAVEVGKVYVVSRGSLKPAKKDYNHLNNE
WEIFLESQSTIELCPDENSSIPAQRFSFTLIDKIEDSENNAIVDVIGVVTSVNPSTTIQR
KNGMETQKRTITLKDMSGRSVEVTMWGDFCNREGLQLQEMVESGAFPVLAVKAGRVNDYS
GKSVGTISSSQLLINPDLAEAQSLRQWFDCGGRDASTQSISRDFTPAASRNEIRRTVAQI
KDDGLGMGDKPDWVTVKATVVFFKTDSFCYTACPNVIGERQCNKKVTKSDSGNWLCDKCN
QEFPECDYRYLLQLQIQDHSGTAWATAFQEPGQELLGCSARELYMFKENEDPRYTDVLLQ
ALHREYLLRLKVKEETYGDERRVKNTVAKVERVDPSAESKFLLDGISRLTGSY
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgaggctgacccccaacgccgtgacggcgacgctggctggggacaccaac
ctcaagccggtggtgcaggtcgtcgacctccggagcatcgcggtcagcgggccccacgcc
gccgggcccaggttccgcgccatcatctccgacggcatcgccacgacgcaggcgctgttc
gcctcgcagctctgcgacctcgcgcgctccggcctcgtccgccgcggcgcgatcgtccag
ctcctcgactacatcgtcaacgaagtccagggcaggagggctatggtcattcttaacatg
gaagttcttgttccagagtgtgagattattggaaatccaacactacctcctgaatctgga
gtttctaattcgaattccatgagagcagaccagtttaatggaacacctggttcgactgca
gggagtactttgagcacagtggcaaggtccactaacaatgctctagtaatccagcgatcg
atggcagggaactcttcgaacatgatccctaggccaagtgacaatgcacaggtcttccaa
ccaacagtacagccatcctatcgccccacacctaattacagaaaccatggcacaatcatg
aaaaacgatgctcccgctagaataatcccaatatccatactaaatccttatcagggccgc
tgggctatcaaggctcgagttactgccaagggagagatccgccggtaccataatgcaaaa
ggtgatggcaaagtgttctcttttgacctgcttgattctgatggtggtgagatacgggct
acatgtttcaatgctctagttgatcgcttctatgaagctgtggaagttggtaaggtctat
gtggtatcaagaggaagcttaaaacctgcaaaaaaggactacaaccatctgaataatgag
tgggaaattttcttggaatctcagtcaaccattgaactttgtcctgatgagaacagctcc
attcctgctcagcggtttagctttacattgattgataaaattgaagattcagagaacaac
gctattgttgatgttattggtgttgttacatctgtcaaccctagtaccacaatacagagg
aaaaacggcatggaaactcagaaaaggaccattaccctgaaggatatgtctggtcgaagt
gttgaggttaccatgtggggtgacttctgcaacagagaaggcttgcagctgcaagaaatg
gttgaatctggggcctttcctgtactggctgtcaaagctggaagagtgaatgattacagt
ggcaagtctgttggcacaatttcttcatctcaactcctcataaaccctgatcttgctgaa
gctcagagtcttaggcagtggtttgattgcggtggaagagatgcttctactcagtccata
tccagggatttcactccagcagcatcaaggaatgagatccgaaggacagtagcacagata
aaggatgatggtcttggtatgggagacaagcccgattgggtcacggtgaaggctactgtt
gtattctttaagactgactccttctgctacacagcttgccccaatgtgatcggagagagg
caatgcaataagaaggtgacaaagtctgactcaggcaactggctctgtgacaagtgcaat
caagagtttccagagtgcgattacaggtatctcctgcagttacagatccaagaccactct
ggaacagcttgggcaacagcattccaagagcctgggcaggagctacttggttgctcggcg
cgagaactctacatgtttaaagagaacgaggatcctcgctacactgatgttttgctccaa
gccttacatcgggagtatcttctgaggctgaaagtgaaagaagaaacatacggcgacgag
cggcgggtgaagaacaccgtggccaaggtggagagggttgatccttcggctgagagcaaa
tttctgcttgatggcatttcaaggttgacaggatcatattga
DBGET
integrated database retrieval system
