Setaria viridis (green foxtail): 117840025
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Entry
117840025 CDS
T07951
Name
(RefSeq) cyclic nucleotide-gated ion channel 2
KO
K05391
cyclic nucleotide gated channel, plant
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
117840025
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
svs04040
]
117840025
Ion channels [BR:
svs04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
117840025
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
IQ
Motif
Other DBs
NCBI-GeneID:
117840025
NCBI-ProteinID:
XP_034576371
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Position
9:complement(5100614..5105889)
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AA seq
728 aa
AA seq
DB search
MPPLAFLRSLPARLLERVCDGVRGSPGAVRDEEAGGGGGGGSGRSAAGHLAGECYACTQP
GVPAFHSTTCDQVHSPGWDADAGSSLVPVRAQQAQASPSASAAQHAGAAARWLFGPVLDP
RSKRVQRWNRWILLGRAAALAVDPLFFYALSVGRGGQPCLYMDAGLAAAVTALRTCADVA
HLGHVLLQFRLAYVSRESLVVGCGKLVWDARAIAAHYARSLKGLWFDLFVILPLPQIIFW
LVIPKLIREEQVKLIMTILLLIFIFQFLPKVYHSIHIMRKMQKVTGYIFGTIWWGFGLNL
FAYFIASHIAGGCWYVLAIQRIASCLQEECKKNNSCDLMSLACSKEICFHPPWSSNVNGL
ACDANMTSFSQQNMSTCLSGNGSFAYGIYLGALPVISSNSLAVKILYPIFWGLMTLSTFG
NDLAPTSNGLEVIFSIINVLSGLMLFTLLIGNIQVFLHAVLARKRKMQLRFRDMEWWMRR
RQLPSRLRQRVRKFERERWAAVTGDEEMEMIKDLPEGLRRDIKRYLCLELVKQVPLFHGM
DDLILDNICDRLRPLVFSSGEKVIREGDPVQRMVFILQGKLRSTQPLTKGVVATCMLGAG
NFLGDELLSWCLRRPFVDRLPASSATFECVEAAQAFCLDAPDLQFITEHFRYKFANEKLK
HTARYYSSNWRTWAAVNIQLAWRRYRARKMDVTAMVAPPLAAGPDDGDRRLRHYAAMFMS
LRPHDHLE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccctcgcattcctccgctccctccccgcgaggctgctcgagcgagtgtgcgat
ggagtcagggggagcccgggcgcggtgcgggacgaggaggcggggggcggcggcggcggc
gggagcggccggtcggcggcggggcacttggcgggggagtgctacgcgtgcacgcagccc
ggggtgccggcgttccactccacgacctgcgaccaggtgcactcgccgggctgggacgcc
gacgcgggctcctcgctagtgcccgtccgggcgcagcaggcccaggcctcgccgtccgcg
tcggcggcgcagcacgcgggcgccgcggcgcggtggctgttcgggcccgtgctggacccg
cggagcaagcgcgtgcagcgctggaaccggtggatcctgctgggccgggccgccgcgctg
gcggtcgacccgctcttcttctacgcgctctccgtcggccgcggcggccagccctgcctc
tacatggacgccggcctcgccgccgccgtcaccgcgctccggacctgcgccgacgtcgcg
cacctgggccacgtcctactccagttccgcctcgcctacgtctcccgcgagtccctcgtc
gtcggctgcggcaagctcgtctgggacgcccgcgccatcgccgcgcactacgcccgctcc
ctcaagggcctctggttcgacctcttcgtcatcctccccctaccgcagatcatcttctgg
ctggttataccaaagttaataagggaggagcaagttaaacttatcatgacaatattgctg
ctcatattcatatttcaattcctccccaaggtgtaccacagtattcatatcatgaggaaa
atgcagaaggtgactggttacatctttggaacaatatggtggggatttggtctaaatcta
tttgcctatttcattgcatctcatatcgcaggtggttgttggtacgttcttgcaattcag
cgtattgcctcctgccttcaggaagaatgcaagaaaaataacagctgcgatctaatgtca
cttgcttgttccaaggagatatgttttcatcctccttggtcatcgaatgttaatggactc
gcatgtgatgcaaacatgacctccttcagtcaacaaaacatgtctacttgtctaagtgga
aatgggtcctttgcttatggaatctatttgggggctcttcctgttatatcaagcaattcg
cttgctgtcaaaatactctatcctatattttggggcctcatgactctcagtactttcggt
aacgacctcgccccaacaagcaatggtcttgaggtgatattcagcataatcaatgtcctc
agtggcctgatgctattcacattgctgataggaaacatacaggtatttctgcatgccgtc
ctggcaaggaagcggaagatgcagctgcgattccgggacatggaatggtggatgagacgg
aggcagctgccgtcccgcctgaggcaaagggtccgcaagttcgagcgcgaacgctgggcg
gccgtcactggagacgaggagatggagatgatcaaggacctgcctgaaggactcaggcgt
gacatcaagcgctacctctgcctcgagctggttaagcaggtccccctgttccatggcatg
gacgacctgatcctggacaacatctgcgaccggctgcggccgctggtgttctccagcggc
gagaaggtgatccgggagggcgacccggtgcagcgcatggttttcatcctgcagggcaag
ctccggagcacgcagccgctgaccaagggcgtggtggcgacgtgcatgctgggcgcgggc
aacttcctgggcgacgagctgctgtcgtggtgcctgcgccgccccttcgtggaccggctc
ccggcgtcgtcggcgacgttcgagtgcgtcgaggcggcgcaggcgttctgcctcgacgcg
ccggacctgcagttcatcaccgaacacttccggtacaagttcgccaacgagaaactcaag
cacacggcgcggtactactcgtctaactggcgaacctgggccgccgtcaacatccagctc
gcgtggcgccggtacagggcaaggaagatggacgtgaccgcgatggtggcgccgccgctg
gccgccggtcccgacgatggggaccggcggctcaggcactacgcggccatgttcatgtcg
cttcggccgcacgatcacctcgagtaa
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