Setaria viridis (green foxtail): 117840051
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Entry
117840051 CDS
T07951
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117840051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117840051
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117840051
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
PRP4
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Beta-prop_SCAP
WD_LRWD1
WD40_like
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
117840051
NCBI-ProteinID:
XP_034576393
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Position
9:complement(43790393..43794173)
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AA seq
524 aa
AA seq
DB search
MENPRPQPPAPTPPMAPLPVPVHPPIAPIPVPPPRAPIPAAASSMASTSASAAGGDDEAE
YEVSDDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMER
RDRLRALMVRLEADGQVDRLLRAQEDDQAARAGEEEEEEEQIQYPFFTEGTQELLNARVD
IAQYSLPRAKARIERAKRRHEDPDEDPEAEADLVVKQAGEFVLECSEIGDDRPLTGCSFS
RDASLLATSSWSGLIKIWSMPQITKVATLKGHTERATDVAFSPADDCLATASADKTAKLW
KPDGSLLMSFDGHLDRLARVAFHPSGKYLGTASFDKTWRLWDINTGKELLLQEGHSRSVY
GVSFHPDGSLVASCSLDAYARVWDLRSGRLFFTLKGHVKPVLGISFSPNGYLVATGSEDN
FCRIWDLRKKEMLYSIPAHKSLVSQVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSLV
GHESKVTSLDISGDGQQIVTVAHDRTIKIWSCRSSIQDNAMELD
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccaggccgcagcccccggcccccacccctcccatggctccgctccccgtc
ccggtccacccgcccatcgcccccatccccgtccctccgccccgcgcgcccatccccgcc
gccgcctcctccatggcctccacctccgcctccgccgctgggggcgacgacgaggcagag
tacgaggtctctgacgaccaccgcgccgcgcgggagcgccacgagcgcgccgtgcaggag
ctactccagcggcgccgcgcgtacgccatggccgtgcccaccaacgactccgccgtgcgg
gcccgcctccgccgcctcggcgagcccatcacgctcttcggcgagcgcgagatggaacgc
cgcgaccgccttcgcgcactcatggtgcggctcgaggccgatggccaggtcgaccgcctc
ctccgggcgcaggaggacgaccaggccgcgcgcgccggcgaggaggaagaggaggaggag
cagatccagtaccccttcttcaccgagggcacacaggagctgctcaatgcgcgcgtcgac
atcgcgcagtactcgctgccccgcgccaaggccaggatcgagagggccaagcgccgccac
gaggatcccgatgaggatccggaggcggaggccgaccttgtcgtgaagcaggctggggag
tttgtgctcgagtgcagcgagattggagatgatcgcccgctcaccggctgctccttctcc
cgggatgcatcactgcttgccaccagttcctggagtggattaatcaaaatatggagcatg
ccacaaataactaaagttgcaaccctgaaaggtcatacagaacgagcaactgatgttgcc
ttttctccagctgatgactgcttagcaacagcttcagctgataaaactgcaaaattatgg
aaaccggatggatcacttctaatgtcctttgatggtcaccttgatcgtcttgctcgcgtt
gcttttcacccatctggaaagtaccttggtacagctagctttgacaagacttggagattg
tgggacatcaatactggaaaggaactgctccttcaagaggggcacagcagaagtgtttat
ggagttagctttcacccagatggttctttggtggcatcttgcagtcttgatgcatatgct
cgagtgtgggatctgagatcgggaagattgttcttcacccttaaggggcatgtgaaacct
gtcctaggaatcagcttctctcctaatggttatctagtagcaactggaagtgaagacaat
ttctgccgaatatgggatttgaggaaaaaggaaatgttatattctataccagctcataag
agtcttgtttcacaggtgaagtttgaaccccaagaagggtattatttagcaacttcttcg
tatgacaccaaagcagctctgtggtcagctcgggattacaaaccaatcaaaagtttggtg
ggccatgagtcgaaggttactagtttggatattagtggagatggacagcaaatcgtgact
gtggcgcatgatcgtacaataaagatttggtcatgcagaagcagcattcaggataatgcg
atggaattggattga
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