Setaria viridis (green foxtail): 117840091
Help
Entry
117840091 CDS
T07951
Name
(RefSeq) chaperonin CPN60-2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117840091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117840091
03110 Chaperones and folding catalysts [BR:
svs03110
]
117840091
03029 Mitochondrial biogenesis [BR:
svs03029
]
117840091
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117840091
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
117840091
Messenger RNA biogenesis [BR:
svs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
117840091
Chaperones and folding catalysts [BR:
svs03110
]
Heat shock proteins
HSP60 / Chaperonin
117840091
Mitochondrial biogenesis [BR:
svs03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
117840091
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117840091
Exosomal proteins of other body fluids (saliva and urine)
117840091
Exosomal proteins of breast cancer cells
117840091
Exosomal proteins of colorectal cancer cells
117840091
Exosomal proteins of bladder cancer cells
117840091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
117840091
NCBI-ProteinID:
XP_034576438
LinkDB
All DBs
Position
9:complement(17399815..17404893)
Genome browser
AA seq
576 aa
AA seq
DB search
MYRAAASLASKARQAGSSAAARQVGSRLAWSRNYAAKDIKFGVEARALMLRGVEELADAV
KVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGD
GTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQV
GTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITN
SKTQKCELEDPLILIHDKKVSNMHAVVKVLEMALKKQKPLLIVAEDVESEALGTLILNKL
RAGIKVCAVKAPGFGENRKANLQDLAVLTGGEVITEELGMKLESVEPLMLGSCKKVTVSK
DDTVILDGAGDKKAIEERAEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEA
EVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELDKLQTANFDQKIGVQIIQNAL
KTPVHTIASNAGVEGAVVVGKLLEQGNTDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVD
AASVSSLMTTTESIIVEIPKEEAPAPAMGGMGGMEY
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgcgcagcagccagcctcgcctccaaggcgcggcaagccgggagcagcgccgcc
gctcgccaggttgggagcaggcttgcctggagcagaaactatgctgccaaggatatcaag
tttggcgttgaggcccgtgccctgatgctgaggggcgttgaggaattggctgatgcagtc
aaagtgacaatgggtcctaagggtcgcaatgtggttattgaacaaagctttggtgcacca
aaagtcacaaaagatggtgtgaccgttgctaagagcattgaattcaaagatagagtaaag
aatgttggtgcaagccttgtgaagcaggtcgccaatgcaactaacgacactgctggagat
ggtaccacatgtgctactgttttgacaaaagcaatatttactgaggggtgcaaatctgtt
gcggccggaatgaatgcaatggatttaaggcgtggaatctcaatggctgttgatgctgtt
gtgaccaatctgaagggcatggccagaatgatcagcacgtcggaagagattgcacaggtg
ggtacaatatcagcaaatggggaaagggaaattggtgaacttattgccaaggctatggag
aaggttggcaaagagggtgtgatcaccattgcggatggtaacaccctttacaatgagctt
gaagttgtggaaggcatgaaacttgacagaggttacatctccccgtacttcattaccaac
tcaaaaacccagaaatgtgaactggaagaccctttgatcttgattcatgacaagaaggtc
tcgaacatgcacgcggtggttaaagttttggagatggctctaaagaagcaaaagcctcta
ctgattgttgcagaagatgtggaaagtgaagcattgggcactctgattcttaacaagctt
cgtgcaggcatcaaggtctgtgctgttaaagctcctggttttggggaaaacaggaaggca
aacttacaagaccttgctgtccttaccggaggagaagtcataactgaagagcttggaatg
aaacttgagagtgttgaacctctaatgttgggttcatgcaaaaaggtgactgtctctaag
gatgacactgttattcttgatggagctggagacaagaaggccattgaagagagggcagag
cagattagatctgcaattgagaatagcacatctgattatgacaaggaaaagctacaggag
aggttggcaaagctctctggaggtgttgctgttctaaagattggaggagccagtgaagca
gaagttggtgagaagaaggatagagtgacagatgcactgaacgctactaaagctgctgtg
gaagagggcattgtaccaggtggtggtgttgctcttctctatgcggcaaaggagcttgac
aaattgcagaccgcgaactttgatcagaagattggtgtccagatcattcagaacgccctg
aagacacctgtgcacaccattgcttccaatgctggtgtggagggagcagtggtggtgggc
aagcttttggagcaaggaaatactgaccttggttatgatgctgccaaaggtgaatatgtt
gacatggtgaaggccggtatcatcgatccactaaaagtcatcagaactgccttggtggat
gctgctagcgtgtcatccctgatgaccacaacggaatccatcattgtagagatccccaag
gaagaggcacccgcaccggcaatgggtggcatgggtggaatggagtactag
DBGET
integrated database retrieval system
