Setaria viridis (green foxtail): 117840116
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Entry
117840116 CDS
T07951
Name
(RefSeq) vacuolar sorting protein 39
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117840116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117840116
Membrane trafficking [BR:
svs04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
117840116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
DUF4837
AlaDh_PNT_N
TPR_WDR35
zf-HC5HC2H
DUF2175
Motif
Other DBs
NCBI-GeneID:
117840116
NCBI-ProteinID:
XP_034576465
LinkDB
All DBs
Position
9:7122829..7134481
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AA seq
997 aa
AA seq
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MVHSAYDAVELVAGVPGRIEAVASHAGKLLVAASDSEGFLRGSDCSLRIYSAPGSSTEGG
GEIRRDGPYALERHEQRFWRRPPLAMEVSASRDLLLSLSEWVALHRLPGLETVAVVSNKT
KGANVFAWDDRRGLLAVGRQKRLTVFRLDSGREFVEVKEFGVPDILKSMAWCGDNICLGI
RREYMIINSMTGALTEVFSSGRIAPPLVVPLPTGELLLGKDNIGVFVDQNGKLIQDGRII
WSDTPASVVIHRPYAVARLPRHVEIRSLRAPNALVQTLLLRDVQKLVQTDNCILAALSNS
VYGFLPVPIGAQIVQLTASGEFEEALALCKLLPPEDSNLRAAKESSIHIRYGHFLFDSGS
YEEAMEQFSDSHVDITYVLSLYPSIVLPQTHIIGEHDKLLDMPELARESSDVTDEMESYS
LQLHESDDKSPLEVKKMSHNALVALVKYLQKKRSGIIERATAEVTEEVVSGAVHHSLILS
EPYKPKKPNKKRAQTHTSSIAREMATVLDTSLLQALLLTGQSSGAIELLKGLNYCDLKIC
EEFLKERSEYMVLLELYKSNEMHREALQLLNQLVEESKSEMENTDFNKKFNPQMIIEYLR
PLCRSDPMLVLESSLYVLERNPSETIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLS
MSETGINPNLQNELVQLYLSEVLDWYKLLKEEESWTEKTYSPTRKKLISTLESNSGYNTD
LLLKRLPQDALFEERAILYGKMNQHLRALSLYVHKLQMPERAVAYCDRVYEEGAQQPSKS
NIYFNLLQIYLNPRKAEKEFEQKIIPVTSQYPGIQKSSSTTKFRGGRTGKKVVEIEGADD
IRFSPSGTDSGRSDGDGDDASEGGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDL
VSFLEPLLRNSSEHLRNYLVIKNLISRANLQVKEDLYKRRQAVVKIDGNSMCSLCHKRIA
NSAFAIYPNGQTLVHFVCFRESQQIKAVRGANSVKRR
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacagcgcgtacgatgcggtcgagctggtggccggcgttccgggccgcatcgag
gccgtggcctcccacgccgggaagctcctcgtcgcggcctccgactccgaaggcttcctc
cggggctccgattgctccctgcgcatctactccgcgccgggctcctccaccgaaggaggc
ggcgagatccggcgggatgggccgtacgcgctcgagcggcacgagcagcggttctggcgg
cgcccgcccttggccatggaggtcagcgccagccgcgacctcctgctctcgctctccgag
tgggtcgcgcttcaccgcctccctgggctcgagaccgtcgccgtcgtctctaacaagaca
aagggtgccaacgtctttgcttgggacgaccggcggggcctccttgcggtcggtcggcag
aagcgcctcaccgtcttccgcctcgacagtgggcgagaatttgttgaagtgaaggaattt
ggagtaccagatattttgaaatcaatggcctggtgtggtgacaacatatgtcttggaatt
agaagggaatatatgataataaacagcatgaccggtgcactaacagaagtgttttcttct
gggaggatcgctcctcctttagttgtacctcttcctactggggagctgctccttggcaag
gataacattggggtattcgttgatcaaaatggcaaacttattcaagatggcaggataatt
tggtcagatacgccggcttctgtcgttatacatagaccatatgctgtggcacgcctgcca
cggcatgttgagatacggtctcttagagcacccaatgcattggttcagacacttctgctc
cgtgatgttcaaaagcttgtccagactgacaactgtatacttgctgcgctatctaactct
gtttatggtttcttgcctgttcctattggtgctcagatagtgcaattgaccgcttctgga
gaatttgaggaggcactagcgttgtgtaagctacttccaccagaggattcaaatttacga
gctgcaaaggaaagctcaatacacataagatatggacactttttgtttgatagtgggagc
tatgaggaggcaatggaacagttttcggattcacatgtggacattacttatgtgttatcg
ctgtacccatctattgttctgcctcaaacacatattataggtgaacatgacaagctgctg
gacatgcccgaattagcaagggaatcatctgatgtgacagatgagatggaatcatactct
ttacagctccatgaatcagatgataaatctccattggaggtaaagaaaatgagtcacaat
gctctagttgcccttgtcaagtatttgcagaagaaaagaagtgggataattgagagagca
acggctgaagtaacagaggaagtggtctctggagctgtgcaccacagcttaatattgtct
gagccatataaaccaaagaagccgaacaagaaacgagctcagacacatactagctctatt
gctagagaaatggcaactgtactggatacttctttgcttcaagcccttcttcttactggg
cagtcatcaggggcaatagaattgctgaaaggactcaattattgcgacctgaagatatgc
gaagagtttttgaaggagaggagcgaatatatggtgttactcgaactctataaaagcaat
gaaatgcaccgcgaagctctccaactgctcaatcagttagttgaagaatcaaaatctgag
atggagaatacagattttaacaaaaaatttaaccctcaaatgatcatcgaatatctcagg
cccctttgcagatcagatccaatgctggttttagaatcttccttgtacgtccttgaacgc
aatccatctgaaactattgagctctttttgtctgaaaatgttccagcagatttggtaaat
tcatatctgaagcaacatgctccaaatttgcagtcaacatacttagaattaatgctctca
atgagtgaaactgggatcaatcctaacttgcaaaatgagctggtgcaactgtacctttct
gaagttcttgactggtataagcttctgaaggaagaggaaagctggacagagaaaacatat
tccccaacacggaagaagttaatatctacattagagagtaattcaggttacaatacagac
ttactcctaaagcgccttccccaggatgctcttttcgaggagcgtgccatattgtatggg
aaaatgaatcagcacctccgtgcactctctctgtatgttcacaagctccaaatgccagag
cgagcagttgcatattgtgaccgtgtttacgaggaaggagcgcaacaaccatccaagtca
aatatctattttaatcttctacaaatttatctgaatccaagaaaagctgaaaaggaattt
gaacagaaaattattccagtaacatcacaataccctggaatccaaaagtctagttctact
actaagttcagagggggtcgcacaggtaaaaaggtcgttgagattgaaggggctgatgac
atacgctttagccccagtgggacagatagtggccgaagtgatggtgatggagatgatgca
agtgagggaggccctataatgttgaatgaagcactggaactgttaagccaacggtgggac
agaataaatggtgctcaggctcttaggctgttaccaagagacactaaactccaggatctc
gtatcatttcttgagccactattgcggaactctagtgaacatctacgcaattatttggtt
atcaaaaacttgatttcccgtgcaaatttgcaggtaaaggaggatctgtacaaacggcgt
caagctgttgtcaagattgatggaaatagcatgtgttctctttgccataagcgcattgca
aatagtgcttttgcaatttatccaaatggacagacattggtgcattttgtctgctttaga
gaatcacagcaaattaaggctgttagaggagcaaactcagtgaaacgtcgctaa
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