Setaria viridis (green foxtail): 117840333
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Entry
117840333 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K22817
non-structural maintenance of chromosomes element 1 [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117840333
03400 DNA repair and recombination proteins [BR:
svs03400
]
117840333
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117840333
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
Atypical E3
117840333
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
117840333
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_Nse1
zf-RING-like
SLX1_C
zf-HC5HC2H
zf-RING_16
HalOD2
DUF5968
zf-RING_2
zf-Tbcl_FmdE
Motif
Other DBs
NCBI-GeneID:
117840333
NCBI-ProteinID:
XP_034576726
LinkDB
All DBs
Position
9:complement(4505572..4509498)
Genome browser
AA seq
336 aa
AA seq
DB search
MAPLPWRQRHHTLLQALLSRGPLAEPDFHAIFAAVSDRQPATHQQLFNDTLLKINKDLTY
LQFELRACMNQYDGIVYYGVVNNIADEESKLGTKYSVPQIAFYKGLLEAIVQEAGNDGSI
TSIDALNVRLDNQVIIVDGSQESQSRLPTSIKNFSLSQKEKTLDELIRDRWLSYTSTGKI
GLGTRSFLDLRSWFRGNDIPSCMVCNEACIKASSCPNEECNVRIHEYCLRKKFSQRKASR
ACPGCGTEWPRQDGEADGDDVNEPEEDQAPSANHSSRKRRKRVKAELVEENDNAGPSTAV
PRRTSRSMKAEAVEAAQEASSAGASQATRTSKRRKK
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctctgccctggcgccagcggcatcacaccctgctgcaggcgctgctctcccgt
ggcccccttgccgagcccgacttccacgcgatcttcgctgctgtctccgacaggcaaccc
gccactcatcaacaactattcaatgatacacttctgaagatcaacaaggacctcacatat
ttgcagtttgagttgcgagcatgcatgaaccaatatgatggaatcgtgtattatggagtg
gttaataacattgctgacgaagaatcaaagcttggaacaaagtattctgtgccccagatt
gcattctacaagggactgttagaagcaattgttcaggaagctggaaatgatgggagcata
accagtattgacgctctcaatgtccggcttgacaaccaggtcattattgtagatggttca
caggaaagccaatctcgtcttcctacttccataaagaacttctcactgagccagaaagag
aaaaccctagatgagctgattcgggatcgttggttgtcatacacctccactggcaagatt
ggtctgggcaccagatcatttcttgatctccgaagctggttccgtggtaacgacatccca
tcatgcatggtgtgtaacgaagcttgtataaaggcatctagctgtcctaatgaggagtgc
aatgttagaatccatgaatactgtcttaggaagaaattttcacagcgaaaggcttcaaga
gcctgtcctggttgtggtaccgaatggccccgtcaggatggtgaagctgacggtgatgat
gtgaatgaacctgaggaggatcaagccccgtcagctaaccattcctcgagaaagaggcgc
aagcgagtcaaagctgaactggtggaagaaaatgataacgcaggcccatcaacggcagtg
cctaggaggacctcaagaagcatgaaagccgaagcagttgaggctgctcaagaggcgtct
tctgcaggagcttcgcaggcaaccaggacgtccaaaagaaggaagaaataa
DBGET
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