Setaria viridis (green foxtail): 117840517
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Entry
117840517 CDS
T07951
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117840517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117840517
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117840517
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117840517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
117840517
NCBI-ProteinID:
XP_072151758
LinkDB
All DBs
Position
1:complement(39183013..39195580)
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AA seq
518 aa
AA seq
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MSGLLNSNLNSSASNLTDSTGRPFTASFSGQSGSIPGFHHSGLHNIHGSFNLPSMPGPLA
QRNGAMSGLPSSGVQQPGGSISGRFTSNNLPVAMSQIPHAHSGVSGRGMNVGAGPAFSSS
MSIGGNIQSLSSSLGAGGSRNSVPGMSVSPSLGNLGPRITSSVGNIVGGSNIGRNISSGG
LSVPSIASRMNLSGNAASGSLNVQGSSRIMNGLLQQASPQLINMFGSSYPTSGGSLSQNQ
IQAGNNSLSSMGMLHDANDTAPFDINDFPQLTGRPNSAGGPQGQYGSLRKQGVGVNTIVQ
QNQEFSIQNEDFPALPGFKGNSSDYAMELHHKEQLHENVPVMQTQQYPMARSVGFNLGSS
YPPNRQQHLQGANSVQNAGTQNIGLRPLSQTPSLASYDQLLQQYQQPQTQNHFRMQQMPS
AAHSFRDQIQKIQGGPSPPDPYGLLGLLGVIRMNDAELVSLALGIDLTTLGLNLNSPDNL
YKTFGSPWSNEPAKGDPDFHIPACYFSEQSSPLQQLLF
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttgctgaattcaaaccttaatagttccgcgtcaaatcttacggactcaacc
ggaagaccatttactgcatccttttcgggtcaatccggatcaattccaggcttccatcat
tctggtttgcacaacattcatggaagtttcaaccttccaagtatgcctggaccacttgca
caaaggaatggtgcaatgagtggccttccatcctctggggttcaacaacctggagggagc
atttctgggagattcacttcaaataaccttccggttgccatgtctcagattccacatgca
cattctggtgtcagtggtagagggatgaatgttggcgcaggtccagcatttagtagcagc
atgagtattggtggtaacattcaaagcttatcctcgagcttgggcgccggtggtagtcgc
aattctgttcctgggatgtcagtatctccatctttaggaaacttgggtccacggatcaca
agttctgtaggaaatattgtaggtggaagtaatattggaagaaatataagctctggtggc
ttatctgtgccaagtattgcatcacggatgaatctgagtggcaatgctgcgagtggtagt
ctaaatgtgcaaggatccagcaggattatgaatggcctgcttcagcaagcatcccctcag
ttgataaatatgtttggaagttcatatccaacatctggagggtcattatcacagaaccaa
attcaagccggaaataattctctaagttctatgggtatgttgcatgatgccaatgatact
gctccatttgacataaatgattttccccaattgactggtcgacctaattccgctggtggt
ccacaaggacaatatggatcattacgcaagcaaggagttggtgttaataccattgttcaa
caaaaccaggaattcagcattcaaaatgaagacttcccggctttgcctggattcaaaggt
aactcttcagattatgctatggagttgcatcataaggaacaacttcacgagaatgtgccc
gtaatgcaaacacagcagtatcctatggcaaggtcagttggctttaatttaggaagtagc
tacccaccaaatcgtcagcaacacctgcaaggtgctaattcagtccagaatgctggaacc
caaaatattggactaagaccactcagtcaaactcctagtttggcatcatatgatcaactt
ctgcagcaataccagcaaccacagactcaaaatcatttcaggatgcagcagatgccttca
gctgcacattcatttcgggatcagattcaaaagattcagggtggaccgtcaccacctgac
ccatatggcttgttaggattactgggagttataaggatgaatgatgctgaattagtatct
cttgctttaggaatagatttaacaacattgggtttgaacttgaattcacctgataatcta
tacaagacatttggctcaccctggtcaaatgagccagcaaaaggggatcctgattttcat
attccagcttgctacttctccgagcaatcttcaccattacagcagctacttttttag
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