Setaria viridis (green foxtail): 117840827
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Entry
117840827 CDS
T07951
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117840827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117840827
03041 Spliceosome [BR:
svs03041
]
117840827
03036 Chromosome and associated proteins [BR:
svs03036
]
117840827
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117840827
Spliceosome [BR:
svs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117840827
Complex B
117840827
Complex C
U2 SnRNP specific factors
117840827
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117840827
TFTC complex
117840827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
117840827
NCBI-ProteinID:
XP_034577256
LinkDB
All DBs
Position
9:54803990..54810363
Genome browser
AA seq
1230 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDTKKSAASGSASTQEIAVARGSTLDLLRPDPETGR
LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGK
SGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTLTFS
LTALDCGFDNPIFAAIELEYAESDRDPTGQAANQAQKLLTFYELDLGLNHVSRKASEPID
NGANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEVRAVIPRRADLPAERGVLIVAAAT
HRQKNLFFFLLQTEYGDIFKVDLEHSGETVTELRIKYFDTIPVTSATCVLRSGFLFAASE
FGNHALYQFRDIGRDADVESSSATLMETEEGFQPVFFQPRPLKNLMRIDEIESLMPVMDM
RVANLFDEETPQLFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNINDMF
DAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVTLLGEDSLMQVHPSGIRHIRED
GRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLA
IAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGG
EDGGDYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCMVSHRQAML
CLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERLGET
FNETAIPLRYTPRKFVILPKKKYIAVIESDKGAFSAEEREAAKKECLEASGAAENGNANN
GDPMENGDGQEDGAEEGNTFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQDNEA
AVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRTLAAGFIHIYKFVSDGRSLELLHKTQVE
EVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPKTIVSIHTYRDRIYVGDMQ
ESFHYCKYRRDENQLYIFADDSVPRWVTAAQHIDFDTMAGADKFGNIYFARLPQDISDEI
EEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECLIYGTVMGSV
GALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPSLP
ADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgcgcgacgggcgcggtgtgcgccgtcatcggc
agcttcagcgggcgcgacacgaagaagtcggcggcctccgggtccgcctccacgcaggag
atcgccgtcgcccggggcagcacgctcgacctcctccgcccggacccggagaccggccgc
ctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctcgcgcagttccgc
ctcaccggcgccaccaaggactacctcgtcgtcggctccgactcgggccgcctcgtcatc
ctcgagtactcccccgaccgcaaccgcttcgacaaggtccaccaggagaccttcggcaag
tccggctgccgccgtatcgtccccggccagctactcgcggtcgaccccaagggccgcgcg
ctctgcatcgccgcgctcgagaagcagaagctcgtctacgtcctcaaccgcgacgccgcc
gcgcgcctcaccatctcgtccccgctcgaggcgcacaagtccaacactctcaccttctcc
ctcaccgccctcgactgtggattcgacaaccccatcttcgccgccatcgagcttgagtat
gctgagtctgaccgcgaccccacggggcaggctgctaaccaggcacagaagctcctcacc
ttctacgagctcgacctgggcctcaaccatgtctcccgcaaggcctcggagcccattgac
aatggtgccaatcttctagtgactgtccctggtggcggtgatggtccgagtggggttctt
gtgtgctgtgacaacttcgtgctgtaccggaaccaggggcatccagaggttcgagctgtt
attccacgccgtgctgacctacctgctgagcgtggtgtcctcattgttgctgctgctaca
cacagacaaaagaatttgttcttcttcttactacagaccgagtatggtgacatcttcaag
gtcgaccttgaacatagtggggaaactgttactgagctcaggatcaagtactttgacacc
atacctgtgacatcagctacctgtgtgctacgatcaggtttcctctttgctgcttctgag
tttggcaaccatgcactttaccagttccgtgatattggccgggatgcggatgtcgagtcc
tcttcagcaacacttatggagacagaggaggggttccagccggttttctttcagccaagg
ccactaaagaacctcatgcgcatagatgagatcgagagcctcatgccagtcatggatatg
cgtgtcgcgaatttatttgacgaggaaacaccccagttgttcacagcctgtggccgtggt
ccacgctccacgctgcgcatcctgaggcccggccttgccattagtgagatggcacgatcg
atgctgcccgcagagcctattgctgtgtggactgtcaagaagaatatcaatgacatgttt
gatgcctacattgtcgtgtcctttgctaatgttacgcttgtgctctctattggtgagacc
attgaagaagtcagtgacagccagttcctggataccacacactcccttgcagtcacgctc
cttggtgaggactctctcatgcaggtccatccaagtggtatcaggcacatcagggaggat
ggccgtgtcaatgagtggaggacgcctggaaagaaaactattacaaaggttggatcaaac
cggctccaggtggtaatcgctctcagtggtggagagctcatatattttgagatggacatg
actggtcagctcatggaggtggagaagcaggacatgtctggcgatgttgcatgcctggcc
attgcgcccgttcctgagggtaggcaaaggtccagatttcttgctgtaggatcctatgat
aacaccatccgtatcctctcgctggaccctgatgactgcctgcagcctctaagtgtgcag
agtgtatcatcagcaccagagtcactcctattcctagaggtccaggcatcagttggtggt
gaggatggtggagactatccagccaaccttttcctcaatgctggcttgcagaacggtgtt
cttttccggaccaatgttgatatggttacgggtcagctatcagacacacggtctcgattc
cttggcctgagacctccaaagctgtttccctgtatggttagccacaggcaagcaatgctg
tgcctgtccagccgtccctggctgggctatatacatcaaggtcacttcctcttgacacct
ctgtcctgtgatactctagaatctgctgcatccttttcttctgatcagtgctcagaaggt
gttgttgctgttgccggagatgccctacgtattttcaccattgaacgcctgggagagact
ttcaatgagacggccatccctctgcgctacaccccaaggaagtttgtgattctaccaaag
aaaaaatatatcgctgtcattgagagcgataagggtgctttcagcgcagaagagcgagaa
gctgctaagaaagagtgccttgaggcttctggtgcagcggagaatggaaatgcgaacaat
ggggatccaatggagaatggtgatggtcaagaagatggtgctgaggagggcaacacattt
cctgatgaacagtatggttatccaaaggcagaatcggagaggtgggtttcctgcattagg
atccttgatccaaggagtagggacactacctgtctactggaattgcaggacaatgaggcg
gctgtgagtatttgcactgtaaatttccatgataaagagcacggcactcttttggctgtt
ggcactgccaagggattgcagttctggccaaagaggacccttgctgctgggttcatccac
atatataagtttgtcagtgacgggaggtcacttgaacttctacacaagacacaagtggag
gaagtacctcttgcattgtgccaattccagggacggttacttgcaggtgttggttcagtg
ctcagactatatgatctggggaagagaaaattgcttaggaaatgtgaaaacaagcttttt
ccgaagacaattgtgtctattcatacctaccgtgataggatctacgttggcgatatgcaa
gagtcgtttcactactgcaagtacagacgggatgaaaaccagttgtatatctttgctgat
gacagtgttcccagatgggttacagcagctcaacacatagattttgacactatggctgga
gctgataagtttgggaatatctattttgctcgtcttcctcaggatatctcagatgagatt
gaagaagacccaactggaggcaagattaaatgggagcaagggaagttaaatggtgcccct
aacaaagtggaggaaatcgtgcagtttcatgtcggtgatgttgtcacaagtttgcagaag
gcctctttaattcctggtggaggtgaatgtcttatttacggaactgtgatgggcagcgtg
ggagcactgcttgcattcacctccagggaagatgttgacttcttctctcacttggagatg
catctccgtcaggagcatccaccattatgtggaagagatcatatggcttacagatctgct
tattttccagtgaaggatgtgatagatggtgatctctgcgagcagtatccatccctacca
gctgatatgcagaggaagattgctgatgagctcgacagaactcctggtgaaatcctgaag
aagctagaagacatcaggaacaaaatcatctaa
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