Setaria viridis (green foxtail): 117840853
Help
Entry
117840853 CDS
T07951
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117840853
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117840853
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
117840853
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
AAA_19
Motif
Other DBs
NCBI-GeneID:
117840853
NCBI-ProteinID:
XP_034577281
LinkDB
All DBs
Position
9:50667168..50686246
Genome browser
AA seq
2082 aa
AA seq
DB search
MLAPLPRLTSALRGHYDADKAYLLRKTVLQALTLPRPHDEWELARKIVPGWDDASSEVRQ
AYKQFIGAVVELLNGEVVSEELHQVAQTVFALFGGDDTEYDATRRAFVKRNELERLVGYT
VQDSVLRKLAQLAQKLGSLLRASSHEFIHRIADDVDENERREFGADFDFKPPARFVIDVS
LDIPLESAELGSETFLKGQYDGWSTSATRNSTAVRGSVSLRWLKDQCDLITRSGGSLSGD
ELAMTLCRVLISNKAGDEIAGELLDLAGDTAFEIVQDLLLHRKELVDAIQHGLAILKSEK
MTSSNQPKMPTYGTQVTVQTESERQLDKIRRKEEKRGKRGVDTGNSDIGVDDFSSLLLAS
ERKQPFDDMIGTGEGADSFTVTSLPQGTTRKHMKGYEEVKIPPTPTASLKPNEKLIEIRE
LDEFAQAAFQGYKSLNRVQSRIFQATYYTNENILVCAPTGAGKTNIAMIAVLHEVKQHFR
DGILHKNEFKIVYVAPMKALAAEVTATFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIV
TTPEKWDVITRKSSDMSLSMLVKLIIIDEVHLLNDDRGSVIEALVARTLRQVESMQSMIR
IVGLSATLPTYLEVAQFLRVNPETGLFFFDSSYRPVPLAQQYIGISERDYTKKSELFNTL
CYEKVVESIKQGHQALVFVHTRKDTGKTARTLIDLAAKAGELELFSSADHPQFPLIKKDV
GKAKSREVVEFFESGFGIHNAGMIRSDRNLMERLFGDGLLKVLVCTATLAWGVNLPAHTV
VIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHDKLAYYLRLLTSQ
LPIESQFLGSLKDNLNAEVALGTVTNVREACAWLGYTYLFIRMKTNPLVYGITWEEVLGD
PSMGAKQRAFIIDAARALDKAKMMRYDEKSGNFYCTELGRIASHFYLQYSSVEIYNEMLR
RHMSESEVITMVAHSSEFENIVVREEEQDELEALARKACPLEIKGGPTDKHGKISILIQV
YISRAPIDSSSLHSDAQYISQSLARIMRALFEICLRRGWSEMSSLLLEYCKAVDRKIWPH
LHPLRQFDKDLSPQILWKLEERNVDLDRLYEMEENEIGALIRFSHQGKLVKQYVGYFPYV
NLSATVSPITRTVLKVDLHITPEFVWKDRYHGMSERWWIIVEDSENDTIYHSELFTLTKK
MARGIPSKISFNVPIFEPHPPQYYIRAISDSWLHAESLFTVSFHNLTLPQTQITHTELLD
LKPLPLSALGNKTYEDLYRFSHFNPIQTQSFHVLYHTDNNVLLGAPTGSGKTISAELAML
HLFNTQPDMKVVYIAPLKAIVRERMNDWRKRLVTQLGKRMVEMTGDFTPDLMALLSADII
ISTPEKWDGISRSWHSRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERSI
RFVGLSTALANARDLADWLGVTDDGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP
AYAAICSHSPNKPVLIFVSSRRQTRLTALDIIQLAASDEKPRQFLSMADNSLDMVLSQVS
DSNLRHTLQFGIGLHHAGLNDRDRSLVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIKG
TEYYDGKTKRYIDYDITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVE
SNLREHLHDHINAEIVSGTISNKEEAIIYLTWTYLYRRLVVNPAYYGLEDTETNTLNSYL
SRLVETTFEDLEDSGCIRIDDHSVKYLILGKIASQYYLSYLTASMFGSNIGPNTSLEAFV
HILSAAAEFDELPVRHNEDNLNRTLSGNVPYPVDQHHLDDPHVKANLLFQAHFSRVELPI
SDYATDLKSVLDQSIRIIQAMIDVCANSGWLSSALSCMHLLQMIIQGLWFERDSSLWMLP
SMNDDILGHLRSRGVLTVPALLDLSREELHRLLQPFSASDLYQDLQHFPRVDVKLQLQNE
QERSKSRTLNIRVQLKNSRRSASRAFAPRFPKAKQAAWWLVLGNSTSSELYGLKRISFAD
WVVNTRMELPQMFNIQETKLILVSDSYLGFDQEYSLEHLTKC
NT seq
6249 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcgccgcttccgcgcctaacgagcgcgctccgcggccactacgacgccgacaag
gcctacctcctccgcaagaccgtcctccaggccctcaccctccccaggccgcatgacgag
tgggagctcgcgcggaagatcgttcccggctgggacgacgcttctagcgaagtgcgccaa
gcatataagcagtttattggggcggtggtggagttgttgaatggagaagtagtgtctgaa
gaactccatcaagttgctcagaccgtgttcgccctgtttggtggcgatgacacagagtat
gatgccacccgaagagcctttgtcaaaaggaatgaattggagaggcttgtgggctacact
gtacaagactcagttttaaggaagctagctcaattagctcagaagcttggttccctccta
cgggcaagctcccatgaatttatccacagaatagcagatgatgtagatgaaaatgagaga
cgtgaatttggagcagactttgatttcaagccacctgctcgtttcgttattgatgtttct
cttgacatacccttagaaagtgctgaattgggcagcgaaacatttctaaaagggcagtat
gatggttggagcacatctgcaactcgtaattcaactgctgttaggggttctgtgagtttg
aggtggctgaaagatcaatgcgatttgataactagaagtggtggctcactctcaggagat
gaacttgcaatgaccttgtgcagagtgctcatatcaaataaagcaggcgacgagatagct
ggtgagctgttggacctggctggtgacaccgcctttgaaatagttcaggatcttcttttg
cataggaaagagctagtagatgcaattcaacatggattggcaatattgaaatctgagaaa
atgacctcaagtaatcaaccaaagatgccaacttatggcacacaggtaactgtacaaaca
gagtctgagcgccaacttgataagattaggaggaaagaggaaaaacgtggcaaacgtggt
gtagacactggcaatagtgatattggtgttgatgatttctcatccctccttttggcaagt
gaaagaaagcagccttttgatgacatgattggtactggagaaggagcagatagttttaca
gtaacttcccttcctcaaggaaccacaaggaaacacatgaaggggtatgaagaagtgaag
attccaccaactccaacggcgtcactgaaacccaatgagaagctgattgaaataagagaa
ttagatgagttcgcccaagctgccttccagggatacaagtcactcaatcgcgtgcagagc
cgtattttccaagctacatactacaccaatgagaatatcctagtttgtgccccaacaggt
gctgggaaaacaaatattgcaatgattgcagttcttcatgaggttaaacaacacttcagg
gatggcattttacataaaaatgagtttaagatagtctatgttgctccaatgaaggccttg
gctgcagaggtaacagcgacattcagtcgccggttatctccattgaacctggtcgttaga
gaacttacaggagatatgcagttgacaaaaaatgagattgaagaaacacagatgatagtg
actactcctgagaagtgggatgtcattacacgcaaaagcagtgacatgtcgctttcaatg
ctggttaagctgataatcattgatgaagttcacctgctaaatgacgatagaggttcagta
attgaggcgctagtagctcggactctccgccaggttgagtccatgcaatcaatgattcgt
attgttggcctatctgctaccctacctacctacttagaggttgcacaatttttgcgggtt
aatccggagactggccttttcttttttgattcaagttaccgtccagttcctcttgctcag
caatacattgggatcagtgaaagggattacacgaagaaaagtgaactattcaatactttg
tgctatgagaaggttgtggagtccattaagcaaggtcaccaagcattggtttttgttcat
actcgtaaggatactgggaaaactgccagaaccctgattgacctagctgcaaaagcaggg
gaattggaattattttcaagcgcagatcatccccagtttccattaatcaagaaagatgtt
ggtaaagctaaaagtcgtgaagttgttgaattttttgaatctggatttggcatacacaat
gctggaatgatacgttctgacagaaatttgatggagcgcttgtttggtgacgggcttttg
aaagtccttgtttgtacagcaactttggcttggggagtaaacttaccagctcacacagtt
gttataaagggcacgcagctatatgatcctaaagctggtgggtggcgagatctggggatg
cttgatgtgatgcagatcttcggacgtgctggaaggccacagtttgataaaagtggtgaa
ggaattattatcacaacacatgacaaattggcttattacttaaggttattgacaagtcag
cttccaatagagagccagttccttggatctctgaaagataatttaaatgccgaggttgcc
ttgggcactgtaacaaatgtcagggaggcctgtgcctggcttggttatacgtacttattt
ataaggatgaagactaatcctctggtttatggaataacttgggaagaggttttgggagat
ccttctatgggtgcaaaacaaagagcattcattattgatgctgcacgtgcactagacaaa
gctaagatgatgcgctacgatgaaaagagtggcaacttttactgcacagaacttggtcga
attgcaagccacttttaccttcagtactccagtgttgagatttacaatgagatgcttcga
cgtcacatgagtgaaagtgaggtgattactatggtggcccattcctctgaatttgaaaat
attgtagtcagagaagaagaacaggatgaactagaagcccttgctaggaaagcgtgcccc
ttggaaattaagggtggaccgactgacaaacatgggaaaatttcaattctcatacaggtt
tatatttcccgtgctccaatcgatagctcctctttgcattctgatgctcaatacatcagt
caaagcttggctcgcattatgagggcactatttgagatttgtctgcgtcgtgggtggtct
gagatgtcatccttattattagaatactgcaaggccgtggatcgcaaaatatggccccat
ctccatccacttaggcagtttgataaggatctttctcctcagatattgtggaaactcgag
gaaagaaatgttgatctggatcgtctttatgagatggaggaaaatgaaattggagctctt
attcggttttctcaccagggaaagttggttaagcaatatgttggatacttcccatatgtc
aacttatctgcaactgtgagcccgatcaccaggacggttcttaaagtcgacctgcatata
acgcctgaatttgtgtggaaagatcgttatcatggcatgtcagaacgatggtggattatt
gttgaggattctgaaaatgataccatttatcactcagagctattcacactaacgaagaag
atggcaagaggaataccttcaaagatatcttttaatgtaccaatatttgaacctcatcca
ccacaatactatatacgagccatatcagactcatggttacatgctgagtcgctctttact
gtttcttttcataatctgacattgccacagacacaaattacgcacactgaacttttggac
ttgaagcctcttccactgagtgctcttggcaacaaaacatatgaggatctgtacagattt
tcccatttcaatccgatacaaactcagtcttttcatgttctttatcacactgataacaat
gtacttctgggagctccaactggaagtggcaagacaatttctgcagaactagcaatgctt
catcttttcaatacacaaccagacatgaaggtagtttacattgcccctttaaaggctata
gtgcgagaacgaatgaatgattggagaaaacgtcttgtaactcagcttgggaagaggatg
gttgagatgactggtgacttcactccagacctgatggccctattatcagctgacatcata
atttctaccccagaaaaatgggatgggattagtcgaagttggcatagcagaagttatgtt
atgaaggtggggctcatgatattggatgagatacatcttttgggagctgaccgtggaccc
atcctagaggtcattgtatcaagaatgagatacatatcgtcacaaactgaacgttcaatt
cggtttgtcggtttatcaacagcattagcaaatgcccgtgatttagctgattggttgggt
gttacggatgatggtctattcaatttcaagcctagtgtgaggcctgtacctcttgaagtg
catatccagggatatcctgggaaattctactgtccgagaatgaatagcatgaacaaacca
gcttatgcagccatatgctctcattcacccaataaaccggttctcatttttgtgtcatca
cgtcgacagactagacttacagctcttgatatcattcagcttgcagcatcagatgaaaaa
ccaaggcagttcctgagcatggcagacaattccctagacatggttctttcacaagtttct
gacagtaatttgaggcatactctgcagtttggcataggtctgcatcatgcaggtttaaat
gacagagacagatccttggttgaggaactcttttcaaacaataagattcaggtactggta
tgtaccagcacgttggcgtggggtgttaatcttccagctcacctggtcataatcaagggc
actgaatactatgatggcaaaacaaaaagatacatcgattatgatatcacagatattcta
caaatgatgggtcgtgcaggtcgaccgcaatacgaccaacatggcaaagctgttattctt
gtccatgagccaaaaaagagcttttacaagaagttcctctacgaaccatttcctgtggag
agtaatctgagggagcacttgcatgatcacataaatgcagaaattgtttcaggcaccatc
agcaacaaggaggaagcgattatttatctcacttggacttacctatatcgccgattggtt
gttaatccagcctactatgggttggaggatactgaaacaaacaccttgaattcttatctc
tcaaggttagtcgaaactacatttgaagatcttgaggacagtggatgcataagaattgat
gaccactctgtaaagtatttgattttgggaaaaatagcttcacagtattaccttagctac
ctcactgcttcaatgtttgggtcaaatattggccccaatacatcgctggaagcctttgtg
cacatactgtcggctgctgcagaatttgacgagcttcctgtacgccacaatgaggataac
ttgaatcgaacactcagtggaaatgtcccgtatccagttgatcaacaccaccttgatgat
ccacatgttaaagccaacttactctttcaggcacatttctcaagagtagaattaccaatt
agtgattacgccacggacttgaaatcagttcttgatcagagcatacgtattatacaggca
atgattgacgtatgtgccaatagtggatggctttcaagtgcgttgtcttgcatgcatctc
ttgcagatgatcatacagggtctctggtttgagagggattcatcactctggatgttgcca
tccatgaatgatgatattctaggtcatctcaggagtagaggagtcttaacagtcccagcc
ttgctggatctttcccgtgaagaattgcacaggctccttcaaccattttctgcgtcagat
ttgtaccaggatctgcaacatttccctcgtgttgatgtgaaacttcagcttcagaatgaa
caggagcggtccaaatctcgaactttaaacatcagagtgcaattgaaaaattcacggcgt
tcagcatcaagagcatttgcccctagatttcccaaggcaaaacaagcagcttggtggctg
gtactggggaattctacaagttcagagctgtatggtttgaaaagaattagttttgcagat
tgggtggttaacactcgcatggaattgcctcagatgttcaatatccaggagacaaagctg
attttggtatcggattcctacctaggttttgaccaggagtactctcttgagcatctcacg
aagtgttga
DBGET
integrated database retrieval system
