KEGG   Setaria viridis (green foxtail): 117840941
Entry
117840941         CDS       T07951                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03030  DNA replication
svs03410  Base excision repair
svs03420  Nucleotide excision repair
svs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117840941
   03410 Base excision repair
    117840941
   03420 Nucleotide excision repair
    117840941
   03430 Mismatch repair
    117840941
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:svs03032]
    117840941
   03036 Chromosome and associated proteins [BR:svs03036]
    117840941
   03400 DNA repair and recombination proteins [BR:svs03400]
    117840941
DNA replication proteins [BR:svs03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117840941
  DNA Replication Termination Factors
   ELG1-RFC complex
    117840941
Chromosome and associated proteins [BR:svs03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    117840941
DNA repair and recombination proteins [BR:svs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117840941
  Check point factors
   HRAD17(Rad24)-RFC complex
    117840941
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_22 Sigma54_activ_2 AAA_16 DUF815 RuvB_N RsgA_GTPase Mg_chelatase ABC_tran AAA_24 AAA_2 AAA_5 AAA_29 nSTAND3 AAA_11 nSTAND1 ATPase_2
Other DBs
NCBI-GeneID: 117840941
NCBI-ProteinID: XP_034577381
LinkDB
Position
9:complement(3508621..3512563)
AA seq 354 aa
MLWVDKYRPKTLDKVTVHDQVAQNLRKLVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG
AGAEKVKMENKTWKIDTGTRTLEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIIQVLEIIGKKENLHLPAGFAARIAAQSNRNLRRAILFFETCKVQQY
PFASNQVAPPLDWEQYVSEIATDILTEQSPKRLYAVRQKFYELLVNCIPPESILKKLLTE
LLKKLDADLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagtaccggcccaagacccttgacaaggtcaccgtccacgaccag
gtcgcgcagaacctcaggaagctcgtgtcggagcaggattgcccgcacctgctgttctat
gggccgtctgggtccgggaagaaaaccctaatcctggcgctcatcaagcagatgttcggc
gccggcgcggagaaggttaagatggagaacaagacgtggaagatcgataccggaacaaga
acacttgagatagagttggcgatgttgtcgagtgctcaccatgtggagatgaaccccagt
gacgcaggctttcaggacaggtatgttgtccaggaggtcatcaaagagatggcgaagaat
aggccgattgatgccaaaggcaagagagcatttaaagtccttgtcttaaatgaagttgac
aagctctcacgagaagcccagcattccctccgtaggactatggagaagtatagcgcatca
tgcaggctgatcctatgctgtaacagctcctcaaaagtgacagaggctgtaaggtcccgt
tgcttaaatgtgcgagtaaacgcacctagtgaagatcagatcatccaagttctggagatc
attgggaagaaagaaaacctgcatcttccagctggatttgctgctcgtattgcagcacaa
tcaaaccgtaatctgagacgggcaatactgttctttgagacttgcaaagtgcaacaatac
ccatttgcatcaaatcaagtggcacctcctcttgactgggagcaatacgtgtctgagata
gcgactgatatcctgacagaacaaagccctaaaaggctatatgctgtacgccagaaattc
tatgaattgctagtcaattgtatcccacctgaaagtattttgaagaagttgttgactgaa
ttactgaagaaattagatgctgatctgaaacatgaaatctgtcactgggctgcacactat
gagcacaagatgcgccttgggtcaaaggccatttttcacctagaagcatttgtggccaag
ttcatgagcatttacaaggagttcctggtggctacatttggttga

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