Setaria viridis (green foxtail): 117840987
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Entry
117840987 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117840987
03041 Spliceosome [BR:
svs03041
]
117840987
03036 Chromosome and associated proteins [BR:
svs03036
]
117840987
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117840987
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117840987
mRNA cycle factors
Common to processing body (P body) and stress granule
117840987
Spliceosome [BR:
svs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117840987
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117840987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117840987
NCBI-ProteinID:
XP_034577436
LinkDB
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Position
9:complement(2764291..2769382)
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AA seq
641 aa
AA seq
DB search
MRSSWADSVANAEESVPATATATAPAVNHQSGRPTLSAYVPPHLRGRSAGPSSEIQAVPA
AAPAPAEVRSAAVQPSGYASVVGGGSRWSGPTGGGGSSAIVGPRQGGGGGGGGGGRGGGG
GWNSRPGWDRRDREPNPFANTEASDVDFEAQENTGINFDAYEDIPVETSGHDVPPPVNTF
AEIDLGDALNENIRRCKYVKPTPVQRHAIPIAIAGRDLMACAQTGSGKTAAFCFPIISGI
LKSRPPQRQRGSRTACPMALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIHQQL
RELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDM
PPRGVRQTMLFSATFPKEIQRLASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSY
LMDLLHAQKANAAHGKQALTLVFVETKRGADALEDWLFKNGFPATSIHGDRTQQEREYAL
RSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAF
FNEGNLSLAKPLCELMQEANQEVPQWLERYAARSSYGGGGGRNRRSGGARFGGRDFRRDR
DFRGGGGGGGYGGGGYGGGGYGGGGGGYGGGYGGGATSSWD
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggtgcccgcgactgct
actgctactgcccctgctgttaatcatcagagtgggcgccccaccctcagtgcatacgtc
cctccccacctccgtggtcgctcagctggtccttcctctgagatccaggcagtgcctgct
gcagctccagcaccagctgaggtacggtcagctgctgtacagccttcaggctacgcatct
gttgttggtggtggctctcgttggtctggccctactggtggtggtggtagcagcgccata
gttggtcctcgccagggtggtgggggtgggggtgggggtggtggtcgaggtggcggtggc
ggttggaactctcgccctgggtgggaccgtagagaccgcgaaccaaacccttttgccaat
actgaggcttcagatgttgattttgaggctcaagagaacacgggcatcaactttgacgcc
tatgaggatattcccgtggagacaagtggccatgatgtccctccaccagtcaacaccttt
gcagagattgatctgggtgacgcgcttaatgagaacatacgaaggtgcaagtatgtgaag
ccaacacctgtgcagcgacatgccattcctatcgccattgcaggtagggacctcatggct
tgtgcacagacagggtctggaaagactgcagcattctgttttcctatcatcagtggtatc
ttgaagtcaaggccaccccagaggcaaaggggttccagaacagcttgtccgatggctctg
atattgtcccctactcgtgagctatctatgcaaattcatgaagaagcaaggaagttttca
taccaaactggtgttagggtggttgttgcatatggtggagcaccaatacaccagcagctg
agggaactggaaagaggtgttgaaatccttgtggcaactcctggtcgtttgatggatctg
ctggagagagctagagtatcactgcaaatgataaagtacttagctcttgatgaagctgat
cgaatgctcgatatggggtttgagccacaaatacgcaagatcgttgaacagatggatatg
cctcctcgtggtgtgaggcagactatgctgtttagtgccacctttccaaaagaaatccag
cgtctggcttcagatttccttgctgactacatcttccttgctgttggaagagttggttcc
agtactgatttgattgctcagagggtcgagtttgtacttgaggcggacaaaaggagttac
ctgatggaccttcttcatgcacaaaaagctaatgctgctcatgggaagcaagctcttact
ttggtctttgtggagacaaagaggggagctgatgctcttgaggactggttgtttaaaaac
ggttttcctgcaacaagtattcatggtgacaggacacagcaggaaagagagtatgcattg
aggtcctttaagagtggagcgactcctatactcgttgcaactgatgtggctgctcgtgga
cttgacataccacatgttgctcatgtcatcaattttgacctcccaaatgacatagatgac
tatgttcatcgtattgggaggacaggacgagcggggaaatctggtctggcaactgccttt
ttcaacgagggcaacttatcactggcaaagccactatgtgagctgatgcaggaagctaac
caggaggttcctcagtggcttgagcgttatgcagcccgttcttcctatggaggtggtggg
ggaagaaaccgccgatcaggcggtgctagatttggtggccgtgacttccgccgtgaccgg
gacttcaggggaggaggtggtggtggaggttatggtggtggtggttacggtggtggaggt
tatggtggcggtggcggcggatatggtggcggctatggtggaggtgcaactagttcctgg
gactaa
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