Setaria viridis (green foxtail): 117841118
Help
Entry
117841118 CDS
T07951
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 2
KO
K03255
protein TIF31
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
svs03012
]
117841118
Translation factors [BR:
svs03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117841118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_10
eIF3_p135
TPR_NPHP3
CLU_N
TPR_2
TPR_9
PAM2
CLU
TPR_MalT
TPR_8
Motif
Other DBs
NCBI-GeneID:
117841118
NCBI-ProteinID:
XP_034577584
LinkDB
All DBs
Position
1:complement(39614907..39624906)
Genome browser
AA seq
1767 aa
AA seq
DB search
MAPKAGKAKPKPKGDKKKKEEKVLPIVLDVTVETPDYTQLTLKGISTDRILDIRKLLAVH
VDTCHLTSYSLSHEVRGAQLKDTVEVASLKPCHLSIVEEDYTEELAVAHVRRLVDIVACT
TAFGAKKPEQKPASPDAAAAAAEAAKPGSPGKTAPGGGGGGEEPMYPPPKLGQFYDFFTF
SHLTPPLHYIRRSTRPFVDDKREDDFFQIDVRVCNGKPVTIVASQAGFYPAGKRALISRS
LVGLLQQTSRAFDGAYKALMKAFVEHNKFGNLPYGFRSNTWVVPPVVADSPSVFPPLPTE
DETWGGNGGGQGRDGKHDHRPWVKEFAILAAMPCKTTEDRQVRDRKAFLLHSLFVDVAVL
KAVASIQQLISNHRSSHETANGTTGPVLYTEQVGDMKIMITKDKADASFKLDVKLDGSQA
PGMSPDELARRNLLKGITADESATVHDTATLGVVIVKHCGYTAVVQVPVDPDLTTTSLAQ
QDIHIEDQPEGGSDALNVNSLRMLLHKSCAPSYGGVQRLQGCDPQDNETTQSFVRKILTD
SLEKLESEAPMVTRPIRWELGACWVQHLQNPTSEKTETKKSEETKDVPTVKGLGKQFGQL
KEIKKKTDDKSGKGAYAKENTSPNTDNASTDNTTSAKEDKETVLQRLLSEAAFERLKESE
TGLHAKSLDELIEMAHKYYDDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMRSLGR
VVELSDKLPHIQSLCIHEMVVRAFKHILRAVIAAVDDVNDVADSVASCLNILLGPFPEEN
NDGNCGEDHNLRKRWLEVFLFKRFGWKWKDEYSLDLRKYAILRGLCHKVGLELLTKDYDM
DMPHPFRKSDIISVVPIYKHVACSSADGRTLLESSKTFLDKGKLEDAVNYGAKALAKLVA
VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV
FYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEA
LKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEKTTLRILQAKLGSEDLRTQDA
TAWLEYFESKALEQQEAARNGTPKPDASIASRGHLSVSDLLDYINPDDELKVKEMQKKQA
RAKIKGRTGQNPSDLVDDEDQRSPPPNNDNLLTEKEDSGVKENGTFVEHVKVKDEIPSDT
ANHIPQDDFTEEYASDEGWQAAVPKGRSTGSRKTGPGTRKQNLAKINTNVFHSENGRYKG
RGPSNFSSPRVSPNETAAPVASGPLAKKLAKNSSFNSKAVSPAVSSSSGENSSNPNSKPA
SPAITAAAAKVIPSTAPAASQTVRKSLSYKEVAIAAPGTLVKALSEVHTEEKDTIDKGAS
VESAKPPKESNDNPSGEKDGATEVSKKGDTSQVSKSTDGGKSEPTDVLLGSNQPETEHKK
TSDAAETSVVKKNTDLAASVTSSATQTEADVPNAGAPTVIEANDSSSNDERDVGEDTPEQ
LSSGGENEKSSASESEKKETTSKLSAAAAPFNPSTVPAFGSMAVPGFREHGGLLPSPANV
PPMLSIPLRKHPHQSATARVPYGPRLAGGYNRSGHRGPRNKPMLPSGEAPTETNTSAPRV
MNPNAPEFVPGQSRSPNGQPASPNGPLTSPGGITSSPQGLPSSPDSTVESPVTASPQVSE
CSQTSPEGNDASCGVNVEAGGEKQNTDDTNHTESKDGKVEPEQTTAPEVAEEAVTAKDVT
EEPIATEQPKSWADYSDGEVEAVEVAS
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaaggcagggaaggccaagcccaagcccaagggcgacaagaagaagaaggag
gagaaagtgttgcccatcgtgctggacgtcaccgttgagacgccggactacacgcagctc
acgctcaagggtatatcaacggataggatcctcgacatccggaagctcctggccgtccac
gtggacacctgccacctcaccagctactccctgtcccacgaggtacgcggggcccagctc
aaggacacggtggaggtcgcctccctcaagccttgccacctcagcatcgtcgaagaggac
tacacggaggagctcgccgtcgcgcatgtgcgccggctggtcgacatcgtcgcctgcacc
accgcattcggggcgaagaagccagagcagaagcccgcttcccccgatgctgccgcggcc
gcggccgaggccgccaagcccgggtcgcccggtaagacggcgcccggcggcggaggaggc
ggggaggagcccatgtacccgccgccgaagctggggcagttttacgacttcttcaccttc
tcgcacctcacgccgcctctgcattatattaggaggtcgacgcgcccattcgttgatgac
aagagagaggacgactttttccaaatcgatgtaagagtttgtaacgggaaaccagtgacg
attgtggcatcccaagcagggttctaccccgcaggaaaacgtgcactcatcagccgctcc
cttgttggactactgcagcagacaagccgtgcatttgatggagcttacaaggctctgatg
aaggcatttgtcgagcacaacaagtttggaaatcttccttatggattccgatcaaatacc
tgggtggttccccctgttgtagcagattcaccatcagtgttcccacctcttccaactgaa
gatgaaacttggggtggcaatggtggtggtcaaggaagggatggaaagcacgaccataga
ccatgggtgaaagaatttgccatccttgctgcaatgccttgcaaaacaactgaggatagg
caagtccgagacagaaaggctttcctactccacagtttatttgtagatgttgcagtcctc
aaagctgttgcatctattcagcaactgatttccaaccataggagttcccatgaaacagca
aatggcaccacagggccagtcttgtacacagagcaagtcggtgatatgaaaataatgatc
acaaaggacaaagcagatgcaagtttcaagttagatgttaagttggatggaagtcaggct
ccagggatgtctcctgatgagcttgctaggcgaaacttgttgaaaggcatcactgctgac
gagagtgcaacagtacatgatactgctactcttggtgtggttattgtaaaacattgtggg
tatacagctgttgtccaagttccagtagatcctgatctgacaactacttccctagcacag
caggacatccacattgaagaccagcctgagggaggtagcgatgctcttaatgtcaatagc
ttaaggatgctgctccataaatcatgtgctccatcatatggaggagttcagcggttgcag
ggctgtgatcctcaagacaatgagactacccaaagttttgtgcggaagatactgacagac
agcctggagaagcttgaaagtgaggctccaatggtaacaagaccgatcagatgggaactt
ggtgcttgctgggtacaacatctacagaacccgacttctgagaagacagaaactaagaaa
agtgaggagactaaggatgttcctacagtaaagggcctgggtaaacaatttggtcagtta
aaggagataaaaaagaagactgatgacaagagtggaaaaggagcatatgcaaaagaaaac
acttcacctaatacagataatgcatctacagacaacactaccagtgcaaaggaggataag
gagactgttcttcagagactgctttcagaagctgcttttgaaaggctaaaggaatctgaa
actggacttcatgctaagtcactggatgaattgattgagatggcgcacaagtattatgat
gatactgccctgccgaaattggtagcagactttggttcacttgagctctcccctgttgat
ggaaggacactgacagattttatgcacactaggggccttcagatgcggtcactgggacga
gtggttgagctttctgacaagcttccacatatacagtccctgtgtatacatgagatggta
gttcgagcatttaagcacatacttcgggctgttattgcagctgttgatgatgtaaatgat
gtggcagactcagttgcatcatgtttaaatattttgctgggaccatttccagaagaaaac
aatgatggcaattgtggcgaggatcataatctcaggaaaaggtggctggaggtcttttta
tttaagagatttggctggaagtggaaagatgaatattcccttgatctaagaaaatatgcc
attctccgtggtctctgccacaaggtaggacttgagttactaaccaaagattatgacatg
gatatgccacatccattcagaaagtcagatattatcagtgtcgttcctatctacaagcat
gttgcatgctcatcagctgatggccgcaccctgctggagtcatccaagactttcctggat
aaaggaaaacttgaggatgctgttaactatggcgcaaaggctcttgcaaaacttgttgct
gtttgtggtccttatcacagaatgacagcaggagcatacagccttcttgcagtagtgctt
tatcatactggcgacttcaaccaggcaaccatctatcaacagaaggctttagatattaat
gagagggaacttggacttgaccacccggatacaatgaaaagctatggagatcttgctgtt
ttctactatcgtctgcaacatacagaactggccctaaagtatgtgaatcgtgccctatat
cttttgcaccttacatgtggcccttctcatcctaacaccgcagcaacttacatcaatgtc
gcgatgatggaagaagggttgggtaatgtccatgttgcactccgttacctgcatgaagct
ctaaaatgcaaccagcgtttgcttggcgctgatcacatacagactgcagctagttatcat
gctattgctatagctttgtctttaatggaagcatactcgctgagtgtccaacatgaaaag
actactctgcgaatacttcaagcaaagcttggatcagaagatcttcggacccaggatgct
actgcttggctggaatactttgagtctaaggcactagagcagcaggaagcagcacgtaat
ggtactccaaagcctgatgcttcaatagcaagcagaggacatctgagtgtatcagatctt
ttggattatatcaatccggatgatgaactcaaggttaaggaaatgcaaaagaaacaagcc
cgtgctaagatcaaaggccgcactgggcaaaacccatctgacctagtcgacgatgaagat
caaaggagccctccacctaacaatgataatttattaactgagaaggaagactctggagtc
aaagagaatggaacctttgttgagcatgtgaaagtgaaagatgaaataccaagtgacact
gcaaaccacatacctcaagatgattttactgaagagtacgcatctgatgaggggtggcaa
gcagctgttccaaagggacgatctacagggagccgcaaaactggtccaggcacaaggaag
caaaatctggcgaaaatcaatactaatgtgtttcacagtgagaatggaagatacaaagga
aggggtccatccaacttctcttcccctcgagtttcccctaatgagactgcagctcctgtt
gcttctggtcctcttgcaaagaaattagctaagaattcgagcttcaattccaaagcagtt
agccctgctgtctcatcaagcagtggtgagaattcttccaatcccaactccaagccagca
agccctgccattactgcagctgctgccaaggtgataccatccacagcaccagctgccagt
caaactgtgaggaagtcactttcatacaaggaagtggcaatagctgcaccaggaactctt
gtcaaagcattaagtgaggtacatacagaagaaaaggatacaattgacaaaggtgcaagt
gttgagagtgctaagcctccaaaagaaagcaatgataacccttctggagagaaagatgga
gcaacagaagtgtcaaaaaagggtgacacttcccaagtatcaaaatcaacagatggaggt
aaatctgagccaactgatgttttgcttggttcaaatcaaccagagacagaacacaaaaag
acctcagatgcagcagagacatctgtagtgaagaagaacacagatcttgctgcctcagtc
acatcatctgcaacacaaactgaggctgacgtcccaaatgcaggagcgccaactgtaatt
gaggcaaacgattcttcctccaatgatgaaagagatgtaggagaggatacaccagaacag
ctgtcaagtggaggggaaaatgagaaatcttccgcatctgagagtgaaaagaaagagaca
actagtaaactttctgctgcggcagctccattcaatccgtccaccgtaccagcttttggt
tcaatggctgtaccaggtttcagagaacatggtggactattgccatcaccagccaatgta
ccccctatgttgtccatccctctacgtaagcaccctcaccaatctgcaacagcaagagtc
ccttacggtccacgtctggctggaggttacaacagatcggggcatcggggacctcgtaac
aagcctatgttgccaagtggtgaagcacctacagaaacaaacacatctgcgcccagagtt
atgaaccctaacgctccagagtttgtgccaggccaatctcggagtcctaatggacaacca
gcatctccaaatggtcctttaacatcaccaggtggtattacatcttccccacagggcctt
ccatcctctccagatagtactgtagaatcaccggtaactgcatccccacaagtttctgaa
tgtagccagaccagtcctgaaggaaatgatgcatcttgcggggtcaatgttgaggctggg
ggtgaaaagcagaacacagacgacacgaaccacacagaaagtaaagatggaaaagtggaa
cctgaacagaccacagctcctgaagttgcagaagaagcagtgacagcaaaagatgttacc
gaagagccgattgcaaccgagcaacccaaatcctgggcagactacagcgatggagaggtt
gaggctgttgaggttgcaagctga
DBGET
integrated database retrieval system
