Setaria viridis (green foxtail): 117841550
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Entry
117841550 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K07573
exosome complex component CSL4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117841550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117841550
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117841550
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
117841550
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
CHASE5
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
117841550
NCBI-ProteinID:
XP_034577849
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Position
1:complement(40609292..40612408)
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AA seq
200 aa
AA seq
DB search
MAATAMDQDGGGGDVVTPGELLGNSLTLVAGRGAYADGRSVRASVTGHRRIVPPAPGSDD
QRSTVEVVGHKAHGAVPQPGSVVIARVTKVMPRMANADIMCVDSKAIKEKFTGLIRQQDV
RATEIDKVDMYQSYRPGDIVRAVVLSLGDARAYYLSTAKNELGVVSAQSIAGGTLVPVSW
TEMQCDLTGQIEQRKVAKVE
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccgcgatggaccaggacggcggcggcggcgacgtggtcacgccgggggag
ctcctcggtaactcgttaaccctcgtggctgggcgcggagcctacgcggatggtcgctcc
gtgcgcgcgtcggtcacaggccaccgccgcatcgtgccgcccgcacctggctccgacgac
cagaggtctacggtggaggtggtggggcacaaggcccatggagccgtgccgcagcctgga
agcgtcgtcatcgcccgagtaacaaaggttatgcctagaatggccaatgctgatatcatg
tgtgttgactcaaaggcaatcaaagaaaagttcactggcctgataaggcagcaagatgtt
cgtgcgactgaaatcgacaaggtggatatgtaccagtcatatcggcctggggacattgtt
agagctgtggttctttctctcggtgatgcaagggcctattatctttccactgcgaagaat
gaacttggcgttgtttcagcacaaagtatagcgggtggcacattggtcccagtcagttgg
actgagatgcaatgtgacttgactggccaaattgaacaaaggaaagttgcaaaggtggaa
tag
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