Setaria viridis (green foxtail): 117841687
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Entry
117841687 CDS
T07951
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog B
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
svs03015
mRNA surveillance pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117841687
09122 Translation
03013 Nucleocytoplasmic transport
117841687
03015 mRNA surveillance pathway
117841687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117841687
03041 Spliceosome [BR:
svs03041
]
117841687
03009 Ribosome biogenesis [BR:
svs03009
]
117841687
03012 Translation factors [BR:
svs03012
]
117841687
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117841687
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117841687
mRNA cycle factors
Stress granule specific factors
117841687
Spliceosome [BR:
svs03041
]
Complex C
Other components
EJC/TREX
117841687
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
90S particles
Helicases
117841687
Translation factors [BR:
svs03012
]
Eukaryotic type
Initiation factors
eIF-4
117841687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-GeneID:
117841687
NCBI-ProteinID:
XP_034578049
LinkDB
All DBs
Position
1:complement(41289503..41292703)
Genome browser
AA seq
407 aa
AA seq
DB search
MAAPTTSRRGPGAARNMDDDNLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSAI
QQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTER
VMLAIGDYLNIQVHACIGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
VLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITSKFMTEPVRILVKRD
ELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTV
SAMHGDMPQQERDAIMSEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccaccacctcccgccgcggccccggcgccgcccgcaacatggacgacgac
aacctcaccttcgagacctccccgggggtcgaggtcgtcagcagcttcgaccagatgggg
atcaaggacgacctcctccgcggcatctacggctacggattcgagaagccctccgccatc
cagcagcgcgcagtcctccccatcatcaacggccgcgacgtcatcgcgcaggcccagtcc
ggcacgggaaagacatccatgatctcactcaccgtctgccagatcgtcgacaccgccgtc
cgcgaggtccaggctttgatcctctcacctactagagagcttgcttcgcaaacagagaga
gttatgctggctatcggtgactacctcaacatccaagtgcatgcttgcattggtggaaaa
agtatcggcgaggatatcaggaggcttgagaacggagtgcacgttgtctcaggaactcca
ggcagagtatgtgatatgatcaagagaaggaccctgcgaacaagagccatcaagcttcta
gttctggatgaagctgatgagatgttgagcagaggctttaaggatcagatttacgatgtc
tacagatacctcccaccggaacttcaggtggttttgatctctgccactcttcctcatgag
atcctagagattactagcaagttcatgaccgaaccagttaggatccttgtgaagcgtgat
gagttgaccctggagggcatcaaacaattctttgttgctgttgagaaagaagaatggaag
tttgatacgctgtgtgatctttatgatacgttgaccatcacccaagctgttattttctgc
aatactaagagaaaggtggattggcttactgaaagaatgcgcagcaataacttcacagta
tcagctatgcatggtgacatgccccaacaggaaagggatgccatcatgtcagagttcagg
tctggtgcaactcgtgtgttaatcactacggatgtttgggctcgaggactggacgttcag
caggtttcgcttgtcataaattacgatctcccaaataatcgtgagctttacatccatcgc
attggtcgctctggtcgtttcgggcgcaagggtgtggcgatcaatttcgtgcgcaaggat
gacatccgtatcctgagggatatagagcagtactacagcacacaaattgatgagatgcca
atgaatgttgctgatcttatttga
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