Setaria viridis (green foxtail): 117841719
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Entry
117841719 CDS
T07951
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117841719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117841719
03041 Spliceosome [BR:
svs03041
]
117841719
03036 Chromosome and associated proteins [BR:
svs03036
]
117841719
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117841719
Spliceosome [BR:
svs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117841719
Complex B
117841719
Complex C
U2 SnRNP specific factors
117841719
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117841719
TFTC complex
117841719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
117841719
NCBI-ProteinID:
XP_034578089
LinkDB
All DBs
Position
1:complement(8191164..8196112)
Genome browser
AA seq
1230 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDAKKAASGSASTQEIAVARGSTLDLLRLDPETGRL
RTLLSVDVFSAIRSLAQFRLTGASKDYLVVGSDSGRLVILEYSPDRNRLDKVHQETFGKS
GCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAACLTISAPLEAHKSNTLTFSL
TALDCGFDNPIFAAIELEDAESDRDPTGQAANQAQKVLTFYELDLGLNHVSRKASEPIDN
GANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEVRAVIPRRADLPAERGVLIVAAATH
RQKTLFFFLLQTEYGDIFKVDLEHSGDTVTGLRIKYFDTVPVTSAICVLRSGFLLFAASE
FGNHALYQFRDIGRDADVETSSATLMETEEGFQPVFFQPRALKNLMRIDDIESLMPVMDM
RVANLFDEETPQIFTACGHGPRSTLRILRPGLAISEMARSVLPAEPIAVWTVKKNINDMF
DAYIVVSFANATLVLSIGETIEEVSDSQFLDTTHSLSVTLLGEDSLMQVHPNGIRHIRED
GRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLA
IAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGG
EDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAML
CLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALHIFTIERLGET
FNETAIPLRYTPRKFVILPKKKYIAVIESDKGAFNAEEREAAKKECLEASGAVEDGNANN
ADPMENGDGQENGAEDGNTFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQDNEA
AVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRTLAGGFIHIYKFVEDGRSLELLHKTQVE
EVPLVLCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFLKTIVSIHTYRDRIYVGDMQ
ESFHYCKYRRDENQLYIFADDSVPRWLTAAQHIDFDTMAGADKLGNIYFARLPKDISDEI
EEDPTGGKINWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKACLIPGGGECLIYGTVMGSV
GALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPTLP
ADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctgacgctgcagcgggcgacgggggcggtgtgcgccgtcatcggc
agcttcagcgggcgcgacgcgaagaaggcggcgtccgggtccgcgtcgacgcaggagatc
gccgtggcccggggaagcacgctcgacctcctgcgcttggacccggagacgggccgcctc
cgcacgctcctctccgtcgacgtcttcagtgccatccgctcgctcgcgcagttccgcctc
accggcgccagcaaggactacctcgtcgtcggctccgactccggccgcctcgtcatcctc
gagtactcccccgaccgcaaccgcttggacaaggtccaccaggagaccttcggcaagtcc
ggctgccgccgcatcgtccccggccagctgctcgcggtcgaccccaagggccgcgcgctc
tgcatcgccgcgctcgagaagcagaagctcgtctacgtcctcaaccgcgacgccgccgcg
tgcctcaccatctcggccccgctcgaggcgcacaagtccaacaccctcaccttctccctc
accgcgctcgactgtgggttcgacaaccccatcttcgccgccatcgagctcgaggatgct
gaatctgaccgcgacccaacggggcaggctgcgaaccaggcgcagaaggtcctcaccttc
tacgagcttgacctggggctcaaccatgtctcccgcaaggcctctgagccgattgataat
ggtgccaatcttcttgtgactgtccctggtggcggcgacggtccgagcggggttcttgtg
tgctgtgacaacttcgtgctgtaccggaaccaggggcacccagaggttcgtgctgtcatt
ccacggcgtgctgacctccctgctgagcgtggtgtcctaattgttgctgctgctacacac
aggcaaaagactttgttcttcttcttactacagaccgagtatggtgacatcttcaaggtc
gaccttgaacacagtggggatactgttactgggctcaggatcaaatactttgacaccgta
cctgtaacatcagctatctgtgtgctgcgatcgggtttcctcctctttgctgcttcagag
tttggcaaccatgcactttaccagttccgtgacattggccgggatgcagatgtcgagacc
tcttcagcaacattgatggaaacagaggaggggttccagccggtattctttcagccaagg
gcactaaagaacctcatgcgcatagacgacattgagagcctcatgccagtcatggatatg
cgtgttgcaaatttatttgatgaggaaacaccccagatattcacagcctgtggccatggt
ccacgctccacacttcgcatcctgaggcctggccttgccatcagcgagatggcacgatca
gtgctgcctgcagagcctattgctgtgtggactgtcaagaagaatatcaatgacatgttt
gatgcctacattgttgtgtcttttgctaatgctacacttgtgctctctattggtgaaaca
attgaagaagtcagtgacagccagttcctggataccactcactcgctttcagtcactctc
ctcggtgaggactctctcatgcaggtccatccaaatggtatcaggcacatcagggaggat
ggccgtgtcaacgagtggaggacgcctggaaagaaaactattacaaaggttggatcaaac
cggctccaggtagtaatcgcactcagtggcggagagctcatctattttgagatggacatg
actggtcagctcatggaggtggagaagcaggacatgtctggcgatgttgcatgcctggcc
attgcaccggtccctgaggggaggcaaaggtccagatttctcgctgtaggatcctatgat
aacaccatccgtatcctctctctggaccctgatgactgcctgcagcctttaagtgtccag
agtgtatcatcggcaccagaatcactcctattcctggaggtccaggcatcagttggtggt
gaggatggtgccgactatcctgccaaccttttcctcaatgctggtttgcaaaatggtgtt
cttttccggacaaatgttgacatggttacaggtcagctatcggacacacgatctcgattc
cttggcctgagacctccaaagctatttccctgtatagttagccacaggcaagcaatgctc
tgcctgtccagccgtccctggctgggctatatacatcaaggtcacttcctcttgacacca
ttgtcctgtgatacgctcgaatctgctgcatccttttcttctgatcagtgctcagaaggt
gttgttgctgttgctggagatgccctacatattttcaccattgaacgcctgggagagact
ttcaacgagacagccatccctctgcgctacaccccgaggaagtttgtgattctaccaaag
aaaaaatatattgctgtcattgagagcgataagggtgcattcaacgcagaagagcgagaa
gctgctaagaaagagtgcctcgaggcttctggtgccgtggaggatggaaatgcgaataat
gcggatccaatggagaatggggacgggcaagaaaatggtgctgaggatggcaacacattt
cctgatgaacagtatggttatccgaaggcagaatcggagcggtgggtttcctgcattagg
atccttgatccaaggagtagggacacgacctgtctgctggaattgcaggataatgaggct
gctgtgagtatttgcactgtgaatttccatgataaggagcacggcactcttcttgctgtt
ggcactgccaagggattgcagttctggccaaagaggacccttgctggtgggttcatccac
atatataagtttgtggaggatgggaggtcacttgaacttctacacaagacacaagtggag
gaagtacctcttgtgttgtgccaattccaaggacggctacttgcaggtgttggttcagtg
ctcagactatatgatctggggaagagaaagttgctcaggaaatgtgaaaacaagcttttt
ctaaagacaatagtgtctattcatacctaccgtgataggatctatgttggcgatatgcaa
gagtcatttcactactgcaagtacagacgggatgaaaaccaactatacatctttgctgat
gacagtgttcccagatggcttaccgcagctcaacatatagattttgacactatggctgga
gcagataagcttgggaatatatattttgctcgtcttcctaaggatatttcagatgagatc
gaagaggacccaactggaggaaagataaattgggagcaaggaaagttaaatggtgcccct
aacaaagttgaggaaatcgtgcagtttcatgtcggtgatgttgtcacatgtttgcagaag
gcctgtttaattcctggcggaggtgaatgtcttatttacggaactgtgatgggcagtgtg
ggtgcactgcttgcattcacttccagggaagatgttgacttcttctctcacttggagatg
catctccgtcaggagcatccaccattatgtggaagagatcacatggcctacagatctgct
tattttccagtgaaggatgtgatagatggtgatctctgcgagcagtatccgaccctacca
gctgatatgcagaggaagatcgctgatgagctcgacagaacacctggtgaaatcctgaag
aagctagaagacatcaggaacaagatcatctga
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