Setaria viridis (green foxtail): 117842530
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Entry
117842530 CDS
T07951
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117842530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117842530
03110 Chaperones and folding catalysts [BR:
svs03110
]
117842530
03029 Mitochondrial biogenesis [BR:
svs03029
]
117842530
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117842530
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
117842530
Messenger RNA biogenesis [BR:
svs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
117842530
Chaperones and folding catalysts [BR:
svs03110
]
Heat shock proteins
HSP60 / Chaperonin
117842530
Mitochondrial biogenesis [BR:
svs03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
117842530
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117842530
Exosomal proteins of other body fluids (saliva and urine)
117842530
Exosomal proteins of breast cancer cells
117842530
Exosomal proteins of colorectal cancer cells
117842530
Exosomal proteins of bladder cancer cells
117842530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
YIEGIA_cap
Motif
Other DBs
NCBI-GeneID:
117842530
NCBI-ProteinID:
XP_034578897
LinkDB
All DBs
Position
1:179511..184314
Genome browser
AA seq
599 aa
AA seq
DB search
MASPFGTCGLNKPAPAAFATNKHLSPLPSPPVVSIPRKMKMRHQRKCRFTVNAAKEIHFN
KDGSAIRKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVE
NIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKIVAAGANPVQITRGIEKTAKAL
VNELQKMSKEVEDSELADVAAVSAGNNYEIGNIIAEAMAKVGRQGVVTLEEGKSAENNLY
VVEGMQFDRGYISPYFVTDSEKMTVEYENCKLLLVDKKINNARDLITILEDAIRGGYPIL
IVAEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIRDEVGLS
LDKADKEVLGTAAKVVVTKDSTTIVGDGTTQEEVNKRVMQIKNQIEATDQEYEKEKLNER
IAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLIRLASKVDA
IIETLDNDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVIEKVLANKNFRYGYNAATGNY
EDLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIQVPEQAPAANPMGGGSGFGF
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgccattcgggacatgtggcctcaacaagccagcacctgctgcctttgccacc
aacaagcacctttcccccctcccttcgccaccagttgtttccatcccacggaaaatgaaa
atgaggcaccagaggaagtgccgtttcacggtgaatgcagcaaaggagatccacttcaac
aaggacggctccgccatcaggaaacttcagaatggcgtcaataagcttgcagatctcgtc
ggggttactcttggaccaaaaggacgaaatgtagtcctggagagcaagtatggctcacct
aaaatcgtcaatgatggtgtcactgtcgcaaaggaggttgagctggaagaccctgttgaa
aatattggagctaaattggtccgccaagctgctgctaaaacaaatgatttggccggtgat
gggacaaccacttcagtcgtccttgctcaagggatgattactgagggtgtaaagattgta
gctgctggtgctaatccagtgcagatcacccgtggtattgagaaaacagccaaagcacta
gtcaatgaactccaaaagatgtccaaggaggttgaggatagtgagcttgctgatgttgct
gcagtaagtgctggaaataactacgaaattgggaatattatagctgaggctatggccaag
gttggacggcagggggtggtcacccttgaagaagggaagagtgctgaaaataacctctat
gttgttgagggaatgcagtttgaccgtggttatatttctccctactttgtgactgacagt
gaaaaaatgacagtggagtacgagaattgcaagctgctccttgtggacaagaaaattaac
aatgcaagagatcttatcactattctggaggacgctattagaggtggatatccaattcta
atagtcgcagaggatattgagcaggaagctcttgcaacccttgtggttaataggcttaga
ggtgcattgaagattgctgctatcaaggcccctggttttggagagcgcaagagtcaatac
ctggatgacattgctactctcactggaggtactgtcatcagagatgaagtgggtttgtcc
ttagacaaggcagacaaagaggtcttaggaacggccgccaaggttgtagtaactaaggat
tcaactacaatagttggagatggtactacacaggaggaagtcaacaaaagggtgatgcaa
atcaagaaccagattgaggctactgatcaggaatatgagaaagaaaagctcaacgagagg
attgctaaactgtccggtggtgttgctgttattcaggtgggagcgcagacagaaactgag
ctcaaggaaaagaaactgagggttgaagatgcccttaatgctacaaaggcagcagttgag
gaaggtattgttgttggtggtggctgcacccttataaggcttgcatcgaaagttgatgct
attattgaaacccttgacaatgatgaacagaaggttggagctgaaattgtaaggaagtcc
ttgagctatccacttaaattgattgcgaagaatgcgggtgttaatggcagtgtggttatc
gagaaggtacttgccaataagaactttaggtatggttataatgcagctacagggaactac
gaggatttgatggctgctggtattattgatcccaccaaggttgtgaggtgttgcttggag
catgctgcctcggttgcaaaaactttcatcacttccgatgctgttgtggttgacatccag
gtgcccgaacaagcacctgctgcaaatccaatgggtggtggttcaggttttgggttctag
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