Setaria viridis (green foxtail): 117842773
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Entry
117842773 CDS
T07951
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117842773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117842773
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
117842773
mRNA cycle factors
Common to processing body (P body) and stress granule
117842773
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
GalA_N
Motif
Other DBs
NCBI-GeneID:
117842773
NCBI-ProteinID:
XP_034579175
LinkDB
All DBs
Position
2:17456750..17463817
Genome browser
AA seq
1037 aa
AA seq
DB search
MMTVPMDSATSASSSRDLAERLFNKNNELEDQLRKSVQSKLPSDPNTWIQMRDNFEKIIL
TDNDFSEQNEVEYLLWQLHYKRIEDFRRSISAASSAASQSGKNNANPDRVKRIKSAFKSF
LSEATGFYHDLMLKIKSNCGLPLGYFPEGFENASNSDKKTAHLRKGLISCHRCLIYLGDL
ARYKSLHGDGDSASREYAAASSYYKEAASIYPSSGNPHHQLAILASYSGNEVVAVYRYFR
SLAADTPFSTARDNLIILFEKNRQSYGQLPDNNKVPIAKILPPRSSGRGRGRGEVRFQPK
DVNTETVARERECNIPDTLKTFYIRFVRLNGILFTRTSLETFGELFSSVSNDLQILLSSG
LEEELNFGSDAAENALSVVRLTAILIFTVHNVKKEPDSQSYAEIVQRRVLLQSAFTAAFE
FVGRILRRCSELRDVASSFYLPAILVYIEWLASHPELAVDSEMEEKHANARSFFWNQCIA
FMNKLVLTNLAAVDGDDDEACFSNMSMYEEGETGNRLALWEDLELRGFLPLVPAHIILDF
SSKHAFGNVGSTKEKKARVQRIFAAGKSLLNFVQIDQLRIFFDPSSKKFVMAKNPPVSKV
DAPLHESPDVLKTNAIEMEHEAARRFDSVSGMSAIQSKVQLCPEGDDDEEIVFKPTASEK
FPKAPSDLSVNGYTHPVPVSAPGWPTNANLASVQSTASMSAAGNYNNTASVSVAGNYNIN
QSLPISSIGWAVNGEQKVIPSAASRFELMQPVEVPASSWTSNGTQHVGPQNTISACPDVA
SDLRVSASMVPHFNSPDYSKLLSEQEMLLMNGLKNINITGNGYLEQRLQAGLSGLQFMGY
LPQIPVESGGNITNLIHNHMKITGETIPSTFDSVVPSIAPSGGVPLKFTETPLAASKKNP
VSRPSKPVGPPPGFNHVTPKRQDDSISVEKLQSPQVDDYSWLDGYQPSMDHVHNLRAVYP
GVSASSTAFTTTFPFAGKQQVSGVHPQGAIEQTWQDFHLFEPAKQNMFQNFPQRSQQSGQ
MAEQEPTNSIWSNSYHV
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttccgatggatagtgctacctccgcctcgtcctcgcgggacctcgcggag
cgcctcttcaacaagaacaacgaactcgaagatcagctccgcaagtccgtgcagtccaaa
ctcccatcagatcccaacacatggattcagatgcgtgacaactttgagaagataattctt
acagataatgacttctctgaacagaatgaggtagagtatctcctctggcagttgcactac
aaaagaatcgaggacttcaggaggagcattagtgccgcaagctcggctgcatctcagagt
gggaagaacaatgccaacccagatcgagtcaagagaattaaatcagccttcaaaagcttc
ctttcagaagcaactggcttctatcatgacttgatgttaaagatcaaatccaattgtggc
cttccactcggttactttccggagggctttgagaatgctagcaactctgacaagaaaaca
gctcatttgaggaaaggtttgatttcatgccatcgctgtctgatatatttgggagatctt
gctcgttacaagagcttgcatggtgatggtgattctgctagtcgtgaatatgctgccgct
tctagttactacaaggaggcagcttctatctatccttccagtggcaaccctcatcatcag
cttgctatactagcttcttactcaggcaatgaggtggtagctgtttataggtacttccga
agcttagctgcggatactccttttagtactgcacgggacaacttgattattctttttgag
aagaatcgtcaaagctatggacagctgccagataacaataaagttcccattgctaagata
ttacccccacggtcatctgggaggggccgaggacggggagaagtaaggtttcagccaaaa
gatgttaatacagaaacagttgcaagggaacgggagtgcaatattccagatacattgaag
accttctatatacgatttgttaggctcaatggaattcttttcacgaggaccagtttggaa
acatttggggagctgttttcttcagtcagcaatgatttgcagattcttctttcttctggt
cttgaggaggagcttaattttggttctgatgcggcagagaatgcattatctgttgttaga
cttaccgccatccttatattcacagtgcacaatgtaaagaaagaaccggatagccagtcg
tatgctgaaattgtgcaacgcagagtactgcttcaaagtgcgtttacagctgcttttgag
tttgttggacgaattctcaggaggtgttcagagcttcgggatgttgcgtcaagtttttat
ctgccagccattctggtctacatcgaatggctggcatcccatccagaattggctgttgat
tcagagatggaggaaaaacatgcaaatgcccgatctttcttctggaaccagtgtattgca
tttatgaataagctggtcctcacgaaccttgcagctgttgatggtgatgacgatgaggct
tgcttttctaatatgagcatgtatgaggagggtgaaactggcaacaggcttgccctttgg
gaagatcttgaattgagaggttttttgccattagttcctgcacatatcattttggatttc
tcaagcaaacatgcatttggaaatgttggaagcaccaaggagaagaaagcacgggtccaa
cggatttttgccgcagggaagtcactgctgaactttgttcagattgatcagttgaggata
ttttttgatccatcttctaagaagtttgttatggccaagaatcctcctgtttctaaagtt
gatgcccctctacatgaatctcctgatgttcttaaaacaaatgcaattgaaatggagcat
gaagctgctagaagatttgattcagtttctggtatgagtgcaattcagtcgaaagtgcag
ttgtgtcctgaaggagatgatgatgaagaaattgttttcaagcctacggcttctgagaag
tttccaaaagctccttcagacctgtcagttaatggatacacccatcctgtcccagtgtct
gctcctggttggccgaccaatgctaatttagcgtctgttcagagcactgcatcaatgtct
gcagctggtaattataataacactgcatctgtatcagttgctggtaattataacattaac
cagtcacttcccatttcttcgattggttgggctgtcaatggtgagcaaaaggtgattcct
agtgctgcttcaagatttgaactcatgcagcctgttgaggtgcctgcttccagctggaca
agcaatggtacacagcatgttggtcctcagaacacaatttcagcttgcccagatgttgcc
tctgacctgcgggtatctgcctcaatggttccacatttcaatagccctgattattcgaaa
ttgctcagtgaacaagaaatgctcttgatgaatggattgaagaatatcaacataactgga
aatggttatctggagcagagattgcaggctggattgagtggtttacagtttatggggtat
ttacctcagatacctgttgaatctggtggtaacattacaaatttgatacataatcatatg
aaaataactggagagaccatcccctctacatttgattcagttgtaccttcaatagcacca
tcgggtggcgtaccgctgaaattcactgaaacaccactagctgcttcaaagaagaaccct
gttagtcgtccgtcaaagcctgttggaccacctccaggatttaatcatgttacccctaag
cgtcaagacgattctatttcagttgaaaaactgcagagcccacaggtcgatgactacagc
tggttggatggctaccagccatcaatggatcatgttcacaatttgagagctgtttatcct
ggtgtgagtgcaagtagcactgcattcaccactacattcccctttgctgggaaacaacag
gtctctggggtgcacccgcaaggggccattgagcagacatggcaagatttccaccttttt
gagcctgcaaaacagaatatgttccaaaatttcccgcaaagaagtcagcaaagtggtcaa
atggctgaacaagagccaacaaattctatctggtccaacagttaccatgtgtga
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integrated database retrieval system
