Setaria viridis (green foxtail): 117842935
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Entry
117842935 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117842935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117842935
03019 Messenger RNA biogenesis [BR:
svs03019
]
117842935
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117842935
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117842935
U7-dependent histone pre-mRNA processing factors
117842935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT
HEAT_EZ
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
117842935
NCBI-ProteinID:
XP_034579352
LinkDB
All DBs
Position
2:47582381..47593395
Genome browser
AA seq
1255 aa
AA seq
DB search
MLAARSPSPSFHAHDRLPPPAHDIAERLRHLRDLRRAPLPSRLARIADLHTDEASPVRKH
VAEIIGEVGSKHMAYLPDIIPCLLHLLNDEVPAVVRQAIKTGTVLFAQLLQHLVIQGLFS
TGGIDDALKLSWERLLKFKSTVSLMAFQTTGNEGVRLLAVKFVEKTVLMYTPDPNIPSDP
PSKATKDMGFNVAWLRGGHSLLNVGDLAMEASQNLGLLLEQLKSPKVKSLSTSMIIVFVT
SLSAIAQRRPSFYGRILPVLLSLDPASSIIKLRVPGAFHALKSAFSACLKCTHSSAEPWR
ARLLEAQNIINQDSIEDTANAAKNLGDTSNMEESLPPMERSNDSSNKRSLGEDMNQMIED
DGHSNKRVRHALDAQEHSEEANKRNVESTSVDISSGQPISIRTENSEAVYQLIGMFAALA
AQGDRAAGSLQILSSSIASDLLAEVVMVNMQHIPMSRPEVDQQQLPSTSSGDGIPFQSSF
PLLASLLKKVNQIDQDEVPPTKESAVVPSVADDIMTVPASSPGPSSVNLPMEENSSSPTV
PLCVETAEVKVTSAGANSLIDILESSETSHASTEPQGTQEHASSYISSLHADNSSAGLSL
AQSSETRSPSSSTVEANHSQLSSLNSLGSQYVLPKLVVNNVDLSDEAKDLLQKESFLRIL
ESDKQEGSGGSIARLPLLAHLGVEFPLELDPWEILQKHVLSDYANNEGHELTLCILNRLY
REAEQDQDFLSSRTATSVYESFLLSVAENLRDMFPASDKSLGKLLCEIPYLPEGVFKLLE
GLCSPGSNEKQDKDIQSGDRVTQGLSAVWNLIMLRPSNRDRCLEIALQSSTHHLEEVRMK
AIRLVANKLFPMASISKKIEDFANEKLNSVLEVIPSGDSAATEMATSEAHNDGGLENLSA
SMANAQTLMSLYFALCTKKHSLLRHVFAIYGSLPQAAKQAVHRQVPILIRTIGSSPDLLG
IISDPPGDSRDLLMQVLQTLTDAAVPSKELISSIKNLYSKTKDVEVLFAILAHLPKDEVL
PVFPSIVNLPMDKFQTALSRILQGSSRNGPSLDPSEILIAIHVIDPDKEGIPLKKVMDAC
SSCFEQRTIFTQQVLAKTLNQLVEQIPLPLLFMRTVMQAIGVFPALVDFVMEIMSRLVSK
QIWKYPKLWVGFLKCAILTKPQSYGVLLQLPAPQLENSLSKNPTLKAPLVEHAEQPNVRS
TLPRSTLVVLGLAEDQQPPPPAVSQAQSSQNQAAETSSSAADTTTEVTQESSAAS
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgctggccgcccggagcccctctccgagcttccacgcgcacgaccgccttcctccgccg
gcacatgacatcgcggagcgcctccgccacctgcgcgaccttcgcagggcgccgctcccc
agccgcctcgcccgcatcgccgacctccacaccgacgaggccagccccgtgcgcaagcat
gtcgccgagatcattggtgaggttgggtccaaacacatggcgtacctacccgatatcatc
ccttgtttgctgcaccttctgaatgatgaggtgcctgcagtcgtcaggcaagctatcaaa
acaggaaccgtgttgtttgcccaactacttcaacacctagttatccagggattattctcc
actggagggattgatgatgcacttaaattgtcatgggaacggcttctcaagttcaaatcc
accgtctcgctcatggcatttcagaccaccggcaatgaaggtgtccggttactggctgtt
aagtttgttgaaaaaacagttcttatgtacacaccagatcctaatatcccatcagatcca
ccaagcaaagctacaaaagatatgggattcaatgtagcatggttacgaggaggtcactct
ttgcttaatgtcggagatctagccatggaagccagccagaacctcggattgttgctagag
cagctcaagtctcctaaagtaaaatcactcagtacttccatgatcattgtcttcgttact
agtctctcagctattgcccaaagaaggccttccttttacggacgcatactgccagtttta
ctctccttggacccagcaagttccattattaaattgcgagtcccaggtgcattccatgct
ttgaagagtgccttctctgcatgcctgaaatgtacacattcaagtgctgagccgtggcga
gcacgtctattggaagctcaaaatattatcaaccaggactcaatagaagatactgcaaat
gctgctaagaatctgggggacacatcaaacatggaagaatcgttgcctccgatggagaga
agcaatgacagtagtaacaagcgtagtttgggtgaggacatgaatcagatgatagaagat
gatggtcactccaataaaagagtcagacatgcacttgatgctcaagaacatagtgaagag
gcaaacaagagaaatgttgagtcaacctctgttgatatctcatctggccagcccatctct
ataagaaccgagaattcagaagctgtgtatcaattaattggtatgtttgctgcactagct
gcacaaggtgacagagctgctggatcactgcaaatcctttcatccagtatcgctagtgac
ttattagcggaggttgtaatggttaacatgcaacatatccctatgtctcgtcctgaagtt
gaccaacaacagcttccttctactagctctggagatggaattccatttcaaagttccttc
cctctgttggcatctctgctgaagaaggtgaatcaaattgatcaagatgaagtgcctcca
actaaggaatccgcagtagtgccatctgttgcagatgatatcatgacagttcctgctagt
tcacctggtcctagttcagtaaatcttcctatggaagagaacagtagcagtccaactgtt
ccattatgtgtagaaacagcagaggtcaaagtaaccagtgcaggtgccaatagtttgatt
gatattctagaatcatcagaaacctcccatgcttcgacagaacctcagggaacccaagag
catgctagcagttatatcagttcattgcatgctgataattcctcagctggccttagtttg
gcacaatcttcagaaactcgcagcccaagctcttcgacagtggaagcaaaccactcacag
ctttcatctttgaattcccttggttcacaatatgttcttccgaagttggttgtcaataat
gttgatctcagtgatgaggccaaagatctgcttcaaaaagagtcatttttgcggattctt
gagagtgataagcaagaaggatctggtggttcaattgctcgccttccgttgcttgctcac
ttgggtgttgagtttcctctggaattggacccttgggaaattctccagaagcatgtgctt
tctgattatgcaaataatgagggacacgagttgactctatgcatcttgaaccggttatat
cgtgaggccgagcaggatcaagattttctttcatctagaactgctacatcagtttacgaa
tcctttcttctgagtgtagctgaaaatcttcgagacatgtttccggcttcagataagtca
cttggcaaattgctttgtgagataccatacttaccagaaggtgtgttcaaactgctagaa
ggtttatgttctcctggaagtaatgagaagcaggacaaggatattcagagtggtgacagg
gtaactcaaggtctcagtgctgtctggaaccttatcatgttaagaccttcaaatcgggac
agatgtctggagattgctttgcagagttcaactcatcatctagaggaggtccgcatgaag
gcaatacgtttggtagcaaataagttatttcccatggcaagcatttccaaaaagattgaa
gattttgcaaatgaaaaacttaattcagttctagaagtgattccttctggtgattctgca
gctactgaaatggctacttctgaagcacacaatgatggtggtttagaaaatttatcagct
tcaatggcaaatgctcaaactctgatgtcgctgtattttgcattgtgcaccaagaaacat
tcccttctcagacatgtatttgcaatatatggtagcctaccgcaagctgccaagcaggca
gttcaccgacaagtaccaattctgatacgcacaataggctcctctcctgatcttcttggg
atcatctcagatccaccaggtgacagccgggacctcctcatgcaggtcttacaaaccctc
actgatgctgctgtgccatccaaagaactgatttcttccataaagaacttatattctaaa
acaaaggatgttgaggtcctttttgcaatcttggctcatctgccaaaagatgaggtcctg
ccggtgttccccagcatagttaatcttcctatggacaagtttcaaacagccctttcacga
atcttgcagggatcatctcggaatggcccttctcttgatccatcagaaattttaattgca
attcatgtaatagatcctgataaggaaggaataccactaaaaaaggttatggatgcatgc
tcttcttgcttcgagcaaagaacaatattcactcagcaagttttggcgaaaacattaaac
caactggttgaacagattcctcttcctttgctattcatgaggaccgtcatgcaagcaata
ggtgtttttcctgcattggtggattttgtgatggagatcatgtcacgccttgtgagcaag
cagatttggaaatatcctaagttatgggtaggatttctgaagtgtgctatcttgacgaaa
cctcagtcatatggcgtgttactgcagttaccagctcctcaacttgagaattccttgagt
aagaatcccacactgaaggcacccttggttgagcacgccgagcagccaaatgtccgatca
actcttccaaggtctactttggtggttctgggtcttgctgaagatcaacaaccacccccg
ccagcagtaagtcaagcgcagagcagccaaaaccaggctgcggaaaccagtagctctgct
gcagatacgactacagaagtaactcaggagtcttctgctgctagttag
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