Setaria viridis (green foxtail): 117843533
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Entry
117843533 CDS
T07951
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117843533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117843533
Spliceosome [BR:
svs03041
]
Complex A
U1 snRNP components
U1 related factors
117843533
Complex B
117843533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
117843533
NCBI-ProteinID:
XP_034580043
LinkDB
All DBs
Position
2:complement(25692700..25706677)
Genome browser
AA seq
983 aa
AA seq
DB search
MASNMQPSGPPQPPRPPMMGSNAQPQNLGPPMPMQFRPVVPSQQPPQFMPPPAQQFRPVG
QPMPGANIGMPGQMPHFPQPGQHLSHSSQVPPASQGVPMAYQPARPMSSAPMQPQQQAVY
PGGHMPTMGAPMQPPSYTYQPTSIPPVVQPWGQSVPHVTPLVQPGHQPVPATATLPSVNS
SEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKY
YFNKVTKQSKWTIPDELKAARELAEKASNQQSDRETGTAAALVGSAASEPSTVPANQSST
AVGLIAPSAHDASANPVPPGPVPSHNVDNTSSSSTIGMQNGGTSTAVVPVPTSTEVKLVA
TDAGTSRNNNESSSVTTGADIEDGTSAEDLEEAKKTMPVAGKINVTPLEEKTSEEEPVVY
ATKTEAKNAFKSLLESVNVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKK
FEAEEKRIKQRKARDDFLAMLEECKELTSSTRWSKAILMFEDDERFKAVERPREREDLFE
GYLVELHKKEKAKAIEEHRRHVAEYKAFLESCDFIKATTQWRKVQERLEDDERCSRLEKI
DRLNVFQDYIRYLEKEEEEQKRIQKEHVRRQERKNRDGFRKMLEEHVNDGTLTAKTRWRD
YCSQIKESQAYLAVASNTSGSTPKELFDDVIEELDKQYLDDKTCIKEVVKSGKIPMTTSW
TLEEFQTAILEDDALKGISTINIKLIYDDQIERLREKEQKDAKKRQRLGENFSDLLYSIT
EISAASTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKRE
KDREEKEKKKEKERKEKERKEKDREKEREKEKGKDRSRRDETDIDGADVENHGSKDKKRD
KQKKHKRRHHDTDDASSERDDKDDAKKSRRHTSDRKKSRKHTHASDSDSENRHKRHRKDR
DSSRRNGAHELEDGELGEDGEVH
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatatgcagccttctgggccgcctcagcctcccaggcctcccatgatgggt
tctaacgctcagccacaaaatcttggaccaccaatgcctatgcagtttaggccagtggtt
ccttcgcaacagcctcctcagttcatgccaccaccagcgcagcagtttcggcctgttggt
cagcctatgccgggagctaacattggcatgccagggcaaatgccacattttccacaacct
ggacagcatttgtctcattcaagtcaggttccacctgcatcacaaggggttcctatggca
tatcagccagctagaccaatgtcatcagcacctatgcagccgcagcaacaagctgtgtat
cctgggggccatatgcctaccatgggcgcccctatgcagcccccatcctatacttatcaa
ccaacttcgattcctcctgtagtgcaaccctggggacagagtgtgcctcatgtgactcct
ctagtgcagcctggacaccagccggtgccagcaacagctactttgccttcagtcaactcg
tctgaacctagctcttcagattggcaagaacacactgcggctgaggggaagaagtactac
tataataagaagactaggcaatcaagttgggagaaacctgtcgaattgatgacacctttg
gagagggctgacgcctcaaccgaatggaaagaatttactactccagaaggacgaaagtac
tatttcaacaaagtaacaaagcaatcaaaatggactattcctgatgagttaaaggctgca
cgtgaattggcagagaaggcatcaaatcaacaatcggatcgagaaacaggaacagctgca
gctcttgttggatctgctgcctctgaaccttctactgtacctgctaatcagtcttcaact
gcagttggtttaattgctcccagcgcgcatgatgcatcagcaaaccctgttcctcctggt
cctgtcccatcacataatgtggacaacacttccagttcttctactattggcatgcaaaat
ggtggtacaagtactgctgttgttcctgttccaacaagcacagaagttaaattagttgca
accgatgcagggaccagcagaaacaataatgaaagttcatctgtaacaactggtgcggac
atagaagatggtacatctgctgaagatttggaggaggccaaaaagaccatgccagttgca
gggaagattaatgtcactccactggaggagaaaacaagtgaagaagaacctgtagtctat
gccactaagacggaggcaaaaaatgcattcaagtccctgctcgagtcagtaaatgttgag
tctgattggacatgggagcagactatgagagtcatcataaatgacaaaagatatggagct
ttgaaaactcttggagagagaaagcaagctttcaatgagtacttgaaccagcgaaaaaag
tttgaagctgaagaaaaacgtatcaaacagaggaaagcacgtgatgatttccttgcaatg
ctggaagagtgcaaggagcttacgtcatcaacaagatggagcaaagcaattcttatgttt
gaagatgatgaaaggttcaaagctgttgaacgtccaagggagcgtgaagatttatttgag
ggctatcttgtggaactacataagaaggaaaaagccaaggctatcgaagaacacagaagg
catgtagcagaatacaaagcttttctagaatcatgcgacttcatcaaggcaactactcag
tggagaaaagttcaagaacggctggaagatgatgaacgctgttctcgacttgaaaagatc
gatcgcttgaatgtttttcaagactacatacggtatctggagaaagaggaggaagagcag
aagcggatacaaaaggaacacgtaagaaggcaagagagaaaaaaccgtgatggatttcgt
aaaatgctggaagaacatgtcaatgatggcacacttactgcaaaaactcggtggcgtgat
tactgctcacagataaaggagtcacaggcttacctggcagtggcgtcaaacacgtctggc
tccacgccaaaagagctatttgatgatgtgatcgaggaacttgataaacagtatctagat
gacaagacctgcatcaaagaagtggtgaagtctggaaagattccaatgacaacctcatgg
acattggaggaatttcaaactgcgattctggaggatgatgctcttaaaggaatatcaacc
atcaacatcaagcttatttatgatgatcagattgaaaggctcagggaaaaagagcaaaag
gatgctaagaagcgccagcgattgggtgaaaatttttcagatcttctgtactcaatcacg
gaaatatcagctgcttcaacgtgggatgattctaaacagctatttgaggacagccaagag
ttcagggccttggacagtgagacttacgctagagagctttttgaagagtgtgttgtccac
ctgaaggaaaggttaaaagagaaagaacgtttgagggaggaagaaaaggcaaaaagagag
aaagaccgtgaagagaaagagaagaagaaagagaaagaaaggaaggagaaagagcgcaaa
gaaaaagaccgggagaaggagagagagaaggaaaaagggaaggatcgatcaaggagagat
gaaactgatattgatggtgctgatgtggagaaccatggttcaaaagataagaaaagagat
aaacaaaagaaacataagagacgccaccatgacacagatgatgctagttctgaaagggat
gataaagatgatgctaagaaatctcggaggcataccagtgatcgcaagaaatctaggaag
catacacatgcttcagactcggatagtgaaaaccggcacaaacgacatagaaaggaccga
gatagttcccgaagaaatggtgcacatgagctggaagatggtgaacttggagaagacggc
gaggtccattag
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