Setaria viridis (green foxtail): 117843542
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Entry
117843542 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117843542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117843542
03041 Spliceosome [BR:
svs03041
]
117843542
03036 Chromosome and associated proteins [BR:
svs03036
]
117843542
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117843542
Spliceosome [BR:
svs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117843542
Complex B
117843542
Complex C
U2 SnRNP specific factors
117843542
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117843542
TFTC complex
117843542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
117843542
NCBI-ProteinID:
XP_034580057
LinkDB
All DBs
Position
2:complement(6540496..6551166)
Genome browser
AA seq
1360 aa
AA seq
DB search
METSTTGGASASSAAASSSSGPSTSASASGSAAGATHYLAKRVLRGSAVLHVAEGCFRSP
DSADVVLAKETSLELVAVGDDGVLQSICEQDMFGIVKDIGVLQWHSRHIGLIPQIEHKDL
LVVLSDSGKLSLLYFCPEMHRFFAIANIELSKPGNLRHQLGRVLAIDRESSFVAVSAYED
KFALIQVSVCQSLHGSGRGTISDKKYFYPPENEEDERTVSGASRTSVRGTIWNMRFISTS
QDEEYYPVLAMIINRKGSDVNDLSLFGHDSSSGVINHISSYSEIGPLALDISEIPEMFGF
ALLFRVGDALLLDLRNPRNVCCVRRISLTTSLIGEPVTVEDSCSVLDVDDDVAACALLEL
RDSANNILKDDGYMDIDGVDSRGSVKSRIVCSWSWEPPDPIKQGWARLLFCLDDGEFHIL
EFTSDVEGVKLCTFEYIDRSLPCKPLLWMKNRMIIGFVEMGDGIIFKLGHRRLFHKSTIQ
NVAPILDLAIADYHGEKQDQMFACCGMCPEGSLRVLRNGVNVEKLLRTEAIYQGVTGLWT
LRMKITDAYHSFLVLSFVEETRILSVGISFNDISDAVGFQPDVCTLACGLVADGLLVQIH
SKGVKLCLPTVYAHPEGAHFTSPICTNWYPDVTISVGAVGHNVVVVATSNPCCLYVLGVR
SSSSYQYELYETQHVQLQFEVSCISIPQEDWRPDNVTLSGGERDDFCNNPLAKVNIRKFA
VIGTHKPSVEIISVEPGEALRLLTIGTISVSNALGAPISGCIPENVRFVAAERFYILAGL
RNGMLLRFESEASEHYFPGSFYKDSSIPSVDTFLQLISIRRIGITPVFLVPIHDSANADI
IVLSDRPWLLHAARHSLAYSSISFLPASHVTPVSSADCPNGLLFVAESCLHLVEMVHGKR
LNAQKFSIGGTPRKVLYHNESRTLLVLRTGLSGASCSSDIVQVDPQNGVLLSRYKCEPGE
TAKCMQITKIGSDQVLIVGTSRSAGRPMMSNGEAESSTKGRLIILSLEAVESPRESSSFI
PTSSFNPSSHSGSPFHEIIGYTTEEFSSNSLCSSPDEFCCNQIQAEQMAGHLRSLTHASL
SGAVLAVYPYLDRYVLAAAGNTIYVFGFANENPHRMKKCAVGRTRFTITCLKTFASRIAV
GDCRDGVLFYSYNESLRKLELIYSDPAQRLVGDIALLNCETAVVSDRRGSISVLSSARLE
VSESPQKNLAVNCSFYMGETAMSIQKAAFRYRLPIDDDTDPVLETAYDCIVASTLLGSLF
VMIPLTSEEHQLLQDVQERLAVHPLTAPVLGNDHAEFRQRSIPSGVPPILDGDMLVLFLE
LTGEQQQAILSHALPGKGQRAPVSVFQVLRTLERVHYALN
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggagacctccaccaccggcggcgcctccgcctcgtcggcggcggcgtcgtcctcctcg
ggcccctccacctccgcgtccgcgtccggttccgccgccggcgccacccactacctcgcc
aagcgggtgctccggggcagcgccgtgctccacgtcgccgaggggtgcttccgctcgccc
gactccgccgacgtcgtcctcgccaaggaaacttcgctagagttggttgctgttggtgat
gatggtgttttgcagtcaatctgtgaacaagacatgtttgggattgtaaaagatattggt
gtcttgcaatggcactccagacatattggtttaattccacagatagaacacaaagatctt
ctggttgtgctttcagattctggaaagctttcccttctttacttttgccctgagatgcat
aggttctttgcaattgccaatattgagttatccaaaccaggaaatctgaggcatcagctg
ggaagagttttagctatagatcgagaatctagttttgttgctgtcagtgcatatgaggat
aagtttgctcttatacaagtttcagtgtgtcagagtcttcatggttctggcagaggtacc
atttctgataagaaatatttttatccaccagaaaatgaagaggatgaaagaactgtaagt
ggtgcatctaggaccagcgtccgcggtacgatttggaacatgcgcttcatatctacatcc
caagatgaagagtactatccagttctggcaatgataattaataggaagggctctgatgtg
aatgacttgtcattatttggacatgactccagcagtggtgtaatcaaccacatctctagt
tattcagaaatcggaccattggcacttgacatatcagaaattcctgaaatgtttggcttt
gcacttctgtttcgtgttggtgatgctttattgttggatcttagaaacccaaggaacgtc
tgttgtgtccgaaggattagcttgacgactagcctgattggagagccagtcaccgttgaa
gattcctgttcagtattagatgttgatgacgatgtggctgcttgtgctttgctagaattg
agagattctgcaaataacatactgaaggatgacggttatatggacattgatggtgttgac
agcagaggtagcgtgaaatcaaggatcgtttgctcatggagctgggagccacctgaccct
atcaaacaaggatgggcaaggcttctattttgcttagatgatggagagtttcatattttg
gaatttacttccgatgttgaaggagtgaagttgtgcacctttgagtatattgataggagt
ttgccctgcaaacctcttttgtggatgaaaaatagaatgataataggatttgtagagatg
ggggatggtataatatttaaacttggacatcgtagattgtttcacaaaagcacaattcag
aatgtagcaccaatattggatctagcaattgctgattaccatggtgagaaacaggatcag
atgtttgcatgttgtggtatgtgccctgagggctctttgcgagttctacggaatggtgtc
aatgtggagaaacttctgaggactgaagctatttatcagggtgttactggattgtggact
ttgagaatgaagataactgatgcttatcactcttttcttgtgttatcatttgtggaggaa
accagaatactatcagtagggataagttttaacgacatcagtgatgccgtgggattccag
cctgatgtttgcactttggcatgtggtttggtggctgatggtttgctcgtgcaaattcac
agtaaaggtgtgaagctctgtttgcctacagtatacgctcaccctgaaggtgcccatttc
acttctccaatttgcaccaactggtatcctgatgttactatcagtgttggtgctgtagga
cataatgttgttgttgttgctacatcaaatccttgttgcctttatgtccttggagttaga
tcatcttcgtcttaccagtacgagttgtatgagacacagcacgttcaattgcaatttgaa
gtatcgtgcatatccatcccgcaagaggattggagacctgataatgtaactttaagtggt
ggagagcgtgatgatttttgtaacaatcccttggctaaagttaatatccgcaagtttgct
gttattggaactcataaaccttctgtggaaatcatctcggtggaacctggagaagcatta
aggttattgactattgggactatatcagtgagcaatgcacttggtgctccaattagtggt
tgtatacctgaaaatgtgagatttgttgcggctgagaggttttacatccttgcaggcttg
cgaaatggaatgctactaagatttgagtcggaagcaagcgagcattattttcctggttcc
ttctacaaggactcttctatcccatctgttgatacatttcttcagttgatttctatacgg
cgtattggaattactcctgtattcttggtaccaatacatgattcagccaatgctgatatc
attgttctcagtgataggccttggctattacatgcagcaagacatagtctggcatattca
tccatttcttttcttcctgcttctcatgtgacgccagtatcatctgctgattgccccaat
ggtctactgtttgttgctgagagctgtttgcatttggttgaaatggttcatgggaagcga
ttgaatgcacaaaagttttcaattggggggactccaaggaaagtgctataccataatgaa
agcagaacactgttggtactaagaactgggctaagtggtgcatcatgttcttcagatatt
gttcaagtagatccacaaaatggggtattgctttccagatataaatgtgaacctggtgaa
acagcaaagtgcatgcaaattacaaaaataggaagtgatcaagttttaattgtcgggacc
agtagatctgctggacggccaatgatgtcaaacggtgaagcagaaagcagtaccaaggga
cgcctgattattttaagcttggaggctgttgaaagtcctcgtgagagcagttcatttatt
ccaacttccagttttaatccctcttcacattctggctctcctttccatgagattattgga
tatacaacagaagaattttctagtaacagcctgtgcagcagtcctgatgagttttgctgc
aaccagattcaagctgaacaaatggcaggacatttgagatcgttaactcatgcttccttg
agtggtgcagtccttgccgtgtacccatatctagatcgttatgtgttggcagctgctggt
aatacgatttatgtatttggtttcgcaaatgaaaatccccataggatgaaaaagtgtgct
gttggtagaacacggtttacaataacctgtttgaagacatttgcatcacggattgcagtt
ggtgattgtcgtgatggtgttctattctattcttataatgagagtcttaggaaactggag
ttgatctattctgatcctgctcaaagattggtgggtgatattgctcttttaaattgtgaa
actgctgtcgtatcagaccggcgtgggagtatatctgtattatctagcgcaagattggaa
gtttcagaaagtccacagaagaacttagctgtaaattgttcattttatatgggcgaaaca
gctatgagcattcagaaggctgcattcaggtatcggcttccaattgatgatgatactgac
ccggttcttgagacggcttatgactgtatcgtggcaagtaccttgctggggagtctcttt
gttatgattccgcttacaagtgaggaacatcagctgttgcaagatgtccaagaaaggctc
gcggtgcacccgttgactgcaccagtcttgggaaatgatcatgcagaatttcgtcagcgc
agtatcccatcaggagtacctcccattcttgatggcgatatgctagtgctattcttggag
ctcactggtgagcagcagcaagccatcctttcacatgctttgcctgggaaggggcaacgt
gcgcctgtctcggttttccaggttttgcgaacattggagcgtgtccattatgcactcaac
tga
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integrated database retrieval system
