Setaria viridis (green foxtail): 117843574
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Entry
117843574 CDS
T07951
Name
(RefSeq) nuclear pore complex protein NUP58
KO
K14307
nucleoporin p58/p45
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117843574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117843574
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117843574
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP58_M
DCT6_helical
SDH_memb_Act
Motif
Other DBs
NCBI-GeneID:
117843574
NCBI-ProteinID:
XP_034580110
LinkDB
All DBs
Position
2:complement(31706452..31711234)
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AA seq
482 aa
AA seq
DB search
MAFSFASPAASNPFQTPAASNPFQTLQTPAAPNPFQTPAPATTQAPSSSPSPFQFSFQQP
QQQQPQQQVAPAAQPQQPQPQPQQQQKLMLYTTDMKPAGYNTKWEELHAESQKALLQIED
KIREYKDESERLDQCSRLYDSSISNVNFELDASRIAQELGGTTTVMEREKASIQELMTVV
NEMMWNTEFAMRSYLMLRPRFIRPGAGVANGGSSNPSAGAPPNQPVVDFYSGVPKRPSLF
MQHTVNRFECYLAECCKWIGELEQLVQMENNKRSSDSLESLPKVMSNVHDYFIYVASKVE
NLHQYVESMKTEYLNEQRHMGNGNDPFLEANRREAAKQEAAAKRVHPTLHLPAPAQPTTQ
IAAPAASQPQQSFFPSGATSSSGFSAFSTPAAAPSSSSLFATPTTPAPSGGLFGASGSAQ
LTTPFGTASTPTLASTPAPGFGTSTSLGGTSLFSTPFGGGATASGSSFGGASKGRSKPRG
RR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgttctccttcgcctcgccggcggcgtcgaacccgttccagacgccggcggcgtcg
aaccccttccagacgctccagacgccagcggcgccgaacccctttcagacgccggccccg
gccacaacgcaggcgccgtcctcctcgccctcgccgttccagttcagcttccagcagccg
cagcagcagcagccacagcagcaggtggctccggcggcgcagcctcagcagccgcagccg
cagccgcagcagcagcagaagctgatgctgtacacgacggatatgaagcccgcggggtac
aacaccaagtgggaggagctgcacgccgagtcgcagaaggcgctgctccagatcgaggat
aagatacgtgagtacaaagatgagagtgagaggttggatcagtgcagtcgtctttatgac
tcctcaatctcgaatgtcaattttgagcttgatgcgagtcgcattgctcaggaactcgga
ggtaccaccactgtgatggagagagagaaggcttccatccaggaattgatgactgtcgtt
aacgaaatgatgtggaacacggaatttgctatgaggtcatacttgatgttgaggccaaga
ttcatccgtccaggtgctggtgttgccaatggtggttcttcaaatccttctgcaggtgct
ccacccaatcagccagtggtagatttctacagtggagtcccaaagcgcccttcccttttt
atgcagcatactgtcaatagatttgaatgttatctcgctgagtgttgcaagtggatcggt
gagctagagcagctggttcagatggagaataataaaagatcatcagattctctggagtct
cttccaaaagttatgtcaaatgtgcatgactacttcatttatgttgcttctaaggtggaa
aatcttcatcagtatgttgagtcaatgaaaactgaatatcttaatgaacagcgtcatatg
ggtaatgggaatgatccgtttctggaggcaaacagaagagaagcagctaaacaagaagca
gctgccaaaagggtccatccaactttgcatttgcctgctcctgcacagcccacaacacaa
attgctgcaccagcagcaagccaaccacagcaatctttttttccatctggcgcaacttcg
tcaagtggtttttcagcttttagcactcctgctgccgctccatcctcatctagtctcttt
gcaactccaacaactccagctccatcaggcggcctttttggcgcatctggatcagctcaa
ttgaccacaccatttggaacagcatccactcctacactagcatcaacaccagctcctgga
tttgggactagcacatctttgggtggaacatcattattttctacaccatttggaggtgga
gctacagcttcaggctccagcttcggtggtgcatcgaaagggaggtctaagccccggggg
cgtcgctga
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