Setaria viridis (green foxtail): 117843678
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Entry
117843678 CDS
T07951
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117843678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117843678
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
117843678
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SAWADEE
ResIII
Motif
Other DBs
NCBI-GeneID:
117843678
NCBI-ProteinID:
XP_034580235
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Position
2:47503803..47509822
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AA seq
1232 aa
AA seq
DB search
MIKGTAGHHNHPIGAVPFEAFHNGSWHGVNSIRIRNGSLFVKFVHSGSAVEHNIDGDYLR
LHSRKATCLDCSHVLRPGADVCVKQASSREETKSSVPLYRDARLIKIKKKHHTDHCLCLF
TVIFYKDQCPGSKGKVTTGTIAKVVTAGDVFILQKLHSGELQDGSVQWSSAEDCLHHNRS
KLLSARFSTEVTHLVVLSSLRGMEFNIKVVEGKIIYQIIKGDQERYSDDSMSIPPGFGKS
MDIISFKPRDEALRPRIITVQVTQVKKHNFTEDMCTAVMDELDSAQDVEVLYEHVDLRRS
KRMKTQPDRFTCYDAPNFNRTYKKKEGNASSTKNENSQSDSSWDSPVQGESSDEEVLGNP
WVKQTVFGPFMVKEDPSSMEVQRKNPMKRTKCSFPVKEKPTCVEIEKNAAEQRSPDSHIP
HTPAKNKEKNSRPPLSFRLKPFTSSHSQGGNSEPAFCQKRGRKRKKHMREREYKEMIDQC
IGNIQCEMERDSDFKLDVQIMNCNGHAYQEGDFTWPPSTDSQEEKDEFEELWKEMDYALA
SIALLEQKQMQDSEATRESNTDLGKGEHCHHDCILDEQLGLTCRLCNVVCTEAKDIFPPM
FAGKDYERSGRSGFCQDDHDLDSSFLEICAPEFSKFKGSGNVWASITDLEPKLHAHQRKA
FEFIWKNLAGSLQLEEMDDSTASRGGCVVAHTPGAGKTLLLISFLVSYLKVHPRSRPLVL
TPKAAIHTWRREFETWGISLPLHVLHYSNGRGKAMGTLSSKTQAILKNFHQPSLKMMRMM
DSLDKLCKWHENPSILLMTYPSFLALTKEDTKLQHRAFMAKVLMNNPGLLILDEGHNPRS
NKSKLRKLLMKVKTEFRILLSGTVFQNNFEEYFNTLSLARPRFVSDVMTALVPEAERETR
NRTGKHQEAVARRIFVEKVGQKIESSSMHDRVDGISLLNKLTCGFIDIFEGTKENNLPGI
RVYTLFMKPTDIQEEVLAKVTMPVPGIARYPLEVELLITIASIHPWLIKTTKCASTYFTP
KEVARVEKYKQKYTVGCKTKFVIDLLHKSSFRGERVLIFCHNVSPINFLVKLIEIVFGWR
LGEEVLVLQGDQELPVRSDVMDKFNGDRKGKRKVLIASTTACAEGISLTGASRLVMLDSE
WNHSKTMQAIARAFRPGQERMVYVYLLVASGTWEEDKYNSNRRKARLAKMVFFGRYVDEP
LQNNVTEIDDEVLKELADEDQTKAFHKVVKQD
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagggaaccgcaggccaccataaccaccccatcggtgcagttccattcgaggca
tttcataacggatcatggcatggagttaattctataaggatacggaatggcagcctcttt
gtgaaatttgtccactctggatccgctgtcgagcataacattgatggggactatctgcgc
ttacattccagaaaagcaacttgcttagattgctcacatgttctcaggccaggtgcagat
gtctgtgtaaagcaagcaagttccagagaagaaacaaaatcttctgtaccattgtatcgt
gatgcaaggctcatcaaaatcaagaaaaaacatcacacagaccactgcctctgcttattt
actgttattttctacaaagaccagtgccctggcagtaaaggaaaagtgacaactggtaca
atagccaaggtagtgacagcgggtgatgttttcatcttgcaaaagctccattctggggag
ctgcaggatggcagcgtgcaatggagttcggcagaggattgcctccatcataatagaagc
aagctgttaagtgcaagattctccacagaagttacacacctggtagttttgtctagcctg
aggggaatggaattcaacatcaaggtggtagaaggtaagatcatttatcaaatcatcaaa
ggagatcaagagcggtatagtgatgattccatgagcatacctccaggttttggcaagagc
atggacataatatcattcaaaccacgtgatgaggctttacgtccaaggatcataacagtt
caagtcactcaggttaagaagcacaatttcacagaagacatgtgtaccgctgtgatggat
gaattggatagtgcacaagatgttgaagtcttgtacgagcatgtggacttgagacgttca
aagcgtatgaaaactcagccagaccgctttacttgttacgatgcacctaatttcaatcga
acctacaagaagaaagagggaaacgcatcatcaaccaagaatgagaattcacagagtgat
tcgagttgggattcaccagttcagggagaatcaagtgatgaagaggtgctaggaaatcct
tgggtgaagcaaacagttttcgggcctttcatggtcaaggaagacccaagttccatggaa
gtccagcgcaagaacccaatgaaaagaactaaatgctcttttcctgtaaaggaaaaacca
acctgcgtggaaatagagaagaatgcagctgagcaaaggagcccggattcccacattcca
catacacctgcgaagaacaaggagaagaacagtcgtccacctttatcatttcgattgaag
ccatttacttcatctcacagccaaggtggcaatagtgaaccagcattctgccaaaagagg
ggtaggaaaagaaagaaacacatgcgtgaaagagaatacaaggaaatgatagaccaatgc
attggaaatatccagtgtgaaatggagagagattctgactttaagctagatgtacagata
atgaactgtaacggacatgcttaccaagaaggggattttacatggccgccttccactgat
agtcaagaggagaaggatgagtttgaagaactgtggaaagaaatggactatgcattggcc
tcaatagcacttcttgagcaaaagcagatgcaagattcagaagccactcgtgagagcaat
actgatctaggaaaaggagaacactgtcatcatgactgcatactggatgaacagcttggt
ctaacctgcaggttgtgcaacgtcgtgtgcactgaggcaaaggatatctttccaccaatg
ttcgctggtaaggactatgagaggtctggacggagcggattttgtcaagatgatcatgat
cttgactcttcttttcttgagatctgcgcaccagaattctccaaatttaagggatctggg
aatgtgtgggcttcaatcactgatcttgaaccaaagttacatgctcatcaaagaaaagcg
tttgaatttatatggaaaaacttggcaggctcattacagcttgaagaaatggatgattca
acagcgagtagaggtggctgtgtggttgcacatactcccggagcgggtaaaacactgttg
ctgatctcatttcttgtcagttacttgaaagttcacccaagaagccgaccattggtgctt
actccaaaagctgcaatccatacatggaggagagagtttgagacatggggcatttcgctt
cctttacatgtgctccactactctaacggaaggggaaaagcaatggggactcttagttca
aaaacacaggcgattttgaagaatttccaccaaccatccttgaaaatgatgcggatgatg
gatagtctggacaaattgtgcaagtggcatgagaatccaagcattcttctcatgacatat
ccatctttcttagcacttacaaaagaagacacaaaactgcagcatcgggcgttcatggcg
aaagttctgatgaacaaccctgggctattgatcctcgatgaagggcacaacccaagaagc
aacaaatcaaagttgagaaagctactgatgaaggtgaagactgaatttagaattctcttg
tctggtacagtcttccagaacaacttcgaagagtatttcaacaccttatctttggccaga
cctcgttttgtcagtgatgttatgacggcgctagttccagaagcggaaagggaaacacgg
aacaggactggtaaacatcaagaagcagtggcaaggcgcatttttgtggaaaaagtgggg
caaaagattgagtctagtagcatgcatgacagagtggatggcatctcattgttaaacaag
cttacttgtgggttcatcgatatatttgaagggacaaaagaaaacaatcttccagggata
cgtgtgtatacccttttcatgaaacccactgacatccaggaagaggtgctagcaaaagta
acaatgcccgtaccgggcattgcccgttatcctctggaggttgagctgctcatcacaatt
gcttctatccatccttggcttataaaaacaaccaagtgtgctagcacttactttacccca
aaagaagtagctagagttgagaagtacaagcagaagtacactgttggttgcaagacaaaa
tttgtgatcgatcttctgcacaagtcctcattcagaggggagagggtgctgatattttgt
cacaatgtatccccgataaactttcttgtcaagctgatagagattgtgtttggatggcgt
cttggggaggaagtcctggtgttgcaaggtgatcaagagctccctgtgcgctcggatgtc
atggataaattcaatggtgatagaaaggggaagaggaaggtgctgattgcttcaacaaca
gcctgtgccgagggtatcagtctgaccggtgcatcaagactagtgatgctggattcagag
tggaaccattcaaagacaatgcaagctatagcaagggcattccggcctgggcaggagaga
atggtatatgtctaccttcttgtggcatctgggacatgggaggaagataaatacaacagc
aacaggaggaaagctcggcttgcaaaaatggtcttctttggacgttatgttgacgaacca
ttgcaaaacaatgtgactgaaatcgatgatgaagttctgaaggagcttgctgatgaagat
cagaccaaagctttccataaagtagtgaagcaggactga
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