Setaria viridis (green foxtail): 117843774
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Entry
117843774 CDS
T07951
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117843774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117843774
Spliceosome [BR:
svs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117843774
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
pAdhesive_15
Motif
Other DBs
NCBI-GeneID:
117843774
NCBI-ProteinID:
XP_034580372
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Position
2:complement(20006975..20011438)
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AA seq
858 aa
AA seq
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MDRDRSSRRSRDDDGHHRSRDRDDDRHRRRSRHDTDDHHKHDGGDDDHRRRHRDKDGGGD
EEDRRSHRHHRDKEDRRSHRHHDGGDDEDDRRRRGRRSVSSSESPPPSAKRERSSSRPRE
SIERRDSADREPPSSSRKRKGHEGGGRGDEADRDVGKRARASVDPPPPKEERPRRERRRF
EDVDANGKDGDVRSKGSKQEGELAVNGDLQSGAAQNAGSQQPFNAASAVVPSSVPVSSKV
SSITTNNENEGVSIRSDEVTGKSSTDGSAISAAGKSSNLSLDALAKAKKALQLKKELSEK
LKKLPMLNDKLGTTGSGTQIKKEDAKTLSAVEVQPLPKGEAKSTGAVSSLPTSSVSGTPA
AAGAIGIPGLTNISNLDAVKRAQELAAKMGFRQDPQFAPLINLFPGTSTELTVPQRPPKA
PVLRLDAQGREIDEQGNVINMTKPTNLSTLKVNINKQKKEAFQIIKPDLDSLAKSSAHFD
ERMGINQNKLLRPKRPGFQFLEEGRLTRQAELHRIKSQFGEAQAKELKVKQAQLAKAKAE
VDMNPNLIEVAPGMRAPKQKQKETIPDIEPWDAKILLSATYEDFTMEKLNMDRITIYVEH
PEPLDPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKMSN
LMKVLGSEAVQDPTRLEMEIRTAAAEREQAHVDRNIARKLTPSERREKKERKLFDDPTNT
VDTIVCVYKIRDLSHPQTRFKVDVNAQENRLTGAAVITDDVSVVVVEGGKKSIKRYNKLM
LNRIDWAAAVGGEDDADEEPDKPVNSCVLVWQGSVAKPTFHRFTVHNCRSEAAAKKVFAD
ASVPHYWDLAVNFSEDSS
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgaccgctcctcccgccgctcccgcgatgacgatggccaccaccgctcccgc
gaccgggacgacgaccgccaccgccgccgcagccgccacgacaccgacgaccaccacaag
cacgacggcggggacgacgaccaccgccgccgccaccgcgacaaggacggcggtggcgac
gaggaggaccgccgcagccaccgccaccaccgtgacaaagaggaccgccgcagccaccgc
caccacgacggcggggacgacgaagacgaccgccgccgccgtggccgccggtccgtgtcc
tcgtcagagtccccgccgccctccgcgaagcgggagcgctcgtcgagccgcccgcgggag
tccatcgagcgccgtgactccgccgaccgcgagccgccgtcctcgtcacggaagcggaag
ggccacgagggcggtggccgtggagacgaggccgaccgagatgtcggcaagcgggctagg
gcctctgtggacccgcctccgcccaaggaggagaggcctaggcgggagcgccggaggttt
gaggatgtcgatgcaaatgggaaggatggtgatgtgaggagtaaggggagcaagcaggag
ggggagttagcagttaatggagatttacagagcggtgccgcacaaaatgctggttctcag
caaccgttcaatgctgcatctgctgtagtgccatcttctgttcccgtgtcttcaaaggta
tcttcgattaccaccaacaatgaaaatgagggggttagtattagatctgatgaggttact
ggaaaatctagtacagatggaagtgcaatctcagctgctggcaaaagtagtaacctatct
cttgatgctttagccaaagctaaaaaagctttgcaactgaagaaggaactgtcagagaaa
ctcaagaaactgcccatgcttaatgacaaacttggtactactggttctggtacacaaatt
aagaaagaagatgcaaaaactttatcagctgtagaagtgcagccccttcctaaaggagaa
gcaaagtctactggtgcagtttctagtctgcccacgagtagtgtctctgggactccagct
gccgctggtgcaattggtattccaggtcttacaaacatttccaatctggatgctgtgaag
cgggcacaagagcttgctgctaagatgggattcaggcaagatccacagtttgctcctctc
atcaacttatttcctggtacatccactgaacttactgtgcctcaaagacctcccaaggcc
cctgtccttcgccttgatgctcagggtagggaaattgatgaacagggaaatgttatcaac
atgacaaagccaacgaatctgagtactctaaaggtcaatataaacaagcagaagaaggag
gcttttcaaataatcaagccagacttggattctcttgcaaaatcaagtgctcattttgat
gaaaggatgggcataaaccaaaacaagctccttcgtcctaaaagaccaggatttcagttc
cttgaagaggggagactcacaaggcaggctgaattgcatagaattaagagtcaatttggt
gaagcacaggctaaagagctcaaagtaaagcaagcccagcttgcgaaggcaaaggcagaa
gtagacatgaatccaaaccttattgaagttgctcctggtatgagagctccaaagcaaaag
cagaaggaaacaattcctgacattgagccatgggatgcaaaaattttactttctgccaca
tacgaggattttactatggagaagcttaatatggacaggatcaccatatatgtagaacat
ccggagccattagatccaccggctgaacctgcaccaccaccgccccagccactgaagttg
actaaaaaggagcagaagaagctaagaacacagaggcgtcttgctaaggaaaaagatagg
caagaaatgattaggcaaggcctcttggagccacccaaaccaaaggtcaaaatgagcaat
cttatgaaagtactaggctctgaagctgtacaagatcccacacggctggagatggaaata
agaactgctgctgcagaacgtgagcaggctcatgttgaccgcaacattgctcgcaagctc
acaccatctgagcgccgtgagaagaaagagcggaagctttttgatgatcctactaataca
gtggatactatagtttgtgtttacaagatcagggacctgtcccatccacagacacgcttc
aaagttgatgtgaatgcacaagagaataggctaaccggtgctgcagtcatcactgatgat
gtcagtgttgtagttgttgaaggagggaagaagtcaatcaaaaggtacaataagctcatg
ctcaaccggatagactgggcagctgcagttggtggcgaggatgatgctgacgaggaacct
gacaagccggtgaatagctgcgtattggtctggcagggcagtgtggcaaagcctactttc
cacaggttcactgtacacaactgccggagtgaggctgctgctaagaaggtttttgctgat
gcttctgtccctcactactgggacctggctgtcaatttttcagaagattcgtcgtga
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