Setaria viridis (green foxtail): 117843805
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Entry
117843805 CDS
T07951
Name
(RefSeq) nuclear pore complex protein NUP214
KO
K14317
nuclear pore complex protein Nup214
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117843805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117843805
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117843805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TACC_C
Motif
Other DBs
NCBI-GeneID:
117843805
NCBI-ProteinID:
XP_034580412
LinkDB
All DBs
Position
2:complement(47207403..47218172)
Genome browser
AA seq
1776 aa
AA seq
DB search
MGSPRELDLSDEVEGDQDGTTDFVFRLAGDPIPLLPTDSSPLPLFDLQSPPARPLAVSDR
HATVFLAHPNGFMAVRTKELIEASKEAREKGKASTRCVQDCCVADVPLPGVSLLALSHDD
SVLAACTDTEIHFFSLASLLTHKDVVPSSSCSMGRAGTLKDFKWLNRASAAYVVLSNGGL
LCHGTLGEGLKDVMENVDAVDCCKEGNHIAVAREKKLTILSSDFKETCCMPLLFQLWSDE
SDSEGSTIKVDSIGWIRDDSIVIGCVRLNEDDNEEGYLVQVIRSEENTFCESPGKPVVYT
YVDFFNGVMDDVLPSGVGPNLLLGYLRRWDLMVASNKKSIDEHIALLKWPSTHDDEKTVK
CLEMLEDKYNPRIDLQENGDDNVILGFGVENVSLFQKITVTVGPEQKEVAPQHILLCLTG
EGKLILYYLARISDPSDLPHTALSTNEDFCEKQISPAAVSKEELTPSVTGSVSKSILREH
GAEPSSAQTGSNQQESMDVRNSSSVSKKQGTTGNSLLISSDKKPLDTKQVNVTAPLATAP
SLALTGNTKPAETFSFSTVNNEGTNPTGSKAPSGLAPSLQQSSNSFGNNQSGKGGLDSIQ
SVGTFGGSQNSNKDGAGFGFKSSLFASSGSVPAKIGERSEAGFGNPSPQTSYTADRKVFG
PPVALSSGPLPSISPAKPSLIGSSSSGYRTGNSEAPQSLHGSPPSQQTIGKSHNSRTQAP
VDYSRNSNMGTIFDSQEDLSKKLYSINEMTKELDALLAYIEKDGGFRDACITFQQRPLSV
FEDGLQNFMELLQVFKNKVEGQCSKIEDLRNKMFQVSARQAYMKGIVSQSSDTQYWDIWN
RQKLSPEFEVKRQNILKANQNLTNQLVELERHFNNLEMNRSSETGRLASSRRAVYSNKSR
ASQTQLSSVCNALNSQLAAAEQLSECLSKQISVLNIGSPTTKRGAVTKELFESIGLAHTT
DATKFLGSTPSKSIKRFPSVNEHSKGVLGPSKSAEPETARRRRESLDMSLASLEPQKTTV
KRIAQQQRLKISSDLPFRSNKKIFDSQMAAISQEKPSDSSNSSIVESYASRLRSPSEDVK
AKPSGSQQNSLFKWVKESTGPTQSSEQKHFELPGQMKSTAQSSKLAPSSPAFSYTHKGAQ
DSISPSNVSSFGTTHIVPKSNTLTFKTTITPKSNANTEPNIPSMATAKTPQSPLSVKTLT
GESGDSSTLAMKNRQDNQAMPSLGNTKGSGPPQSKGDIFRDLSKSSFTSEHSKPAVLHEK
TGQLSRISDAVQNTVKDTPKVASQPPAFSPTPVTQTNSYSIKPTVSSSATSASSGMQASA
AKTSDILSSSMQKSTPKVSPLVPEDNVSSSLQSIPTPVKDLSTGLGKNAAKPETLTSEVT
RAIVPASMASVISTTESKPSSPPTTGANLPSTPVPAPKTAPTTAESVVTSTGKDVGPNNN
STDEDDMEEEAPSASAELNLGALGGFGLGSQPSSSPQKSNPFGTSFGTSENKSSGTPFAL
TTSPGQLFRPASLSIPSAQPAQPSQSTSSSAFSSTFSSGFTGFGQPAQLGSVHQAGFGQP
AQIQSGFGQPAQIVSGPQSGFGQPAQIGVGQQSGFGQPAQFGAQQALGSVLGSFGQSRQL
GGVGSGGFGGFASAATPGGFGSLSSNNAGFAGAAAGGGFSAPAASAGGGFAAAATGGGFA
ALASKSGGFAAAASSGGGFAAAASSGGGFAAAVPSGGGFAAAASSGGGFGGATQGSGFGS
GGGFGSFGGNQGAGFSAFGASGPGRPPADLLTQMRK
NT seq
5331 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgccgcgcgagctggacctctccgacgaggtcgagggcgaccaggacggcacc
accgacttcgtcttccgcctcgccggcgaccccatcccgctcctcccgaccgactcctcc
ccgctcccgctcttcgacctccagtcccctcccgcgcgcccgctcgccgtctccgaccgc
cacgctaccgtcttcctcgcccaccccaacgggtttatggctgtgaggacgaaggagttg
atcgaagccagtaaggaggcgcgggagaaaggcaaggcgagcacccgctgcgtgcaggac
tgctgcgtcgccgacgtgcctctccccggcgtctccctcctcgcgctatcccatgacgat
tccgtgcttgccgcctgcacggacactgagatccacttcttctccttggcgtctctgctc
actcataaggatgttgtaccatcctcatcatgcagcatgggacgagctggcaccttgaaa
gattttaagtggttaaatcgtgcctctgcagcatacgttgtactatcgaatggtgggctg
ctgtgtcatgggactttgggcgaaggtctgaaggatgtaatggaaaatgttgatgcagtt
gactgttgcaaggaaggaaatcatattgctgttgcaagagagaaaaaacttaccatatta
tcatcagattttaaggaaacatgttgcatgcccctcttgttccagttgtggtctgatgaa
agtgattcagagggcagtaccatcaaagtggattccattggctggatacgtgatgatagt
attgttatcggttgtgttcgattaaatgaagatgacaatgaggaaggctatcttgttcag
gttataagaagtgaagaaaacacattttgtgagagcccaggcaagccagttgtatatacc
tatgtggattttttcaacggcgtcatggatgatgttttaccatctggagttggacctaat
ctgctattgggttatctgcgtcgctgggatctcatggtggcttctaataaaaagagcatt
gatgaacacattgcccttctgaagtggccatccacccacgatgatgaaaaaactgtaaaa
tgtcttgaaatgttggaggataaatacaatcctaggatcgatttgcaagagaatggtgat
gacaatgtcatactagggtttggtgttgagaatgtttcactatttcaaaagatcactgtt
acagttggacctgaacaaaaggaggttgcccctcaacatattctactctgtttgactggt
gaaggcaaactaattctatattatctcgccaggatttcggacccttctgatttacctcat
actgctctgtctaccaatgaggacttttgtgaaaaacagatttcacctgcagctgtatct
aaagaggagttgactccaagtgttacaggctcggtatctaagagtattcttagagaacat
ggtgctgagccctctagtgcacaaacaggtagcaatcaacaggaatcaatggatgtcaga
aacagttcctcagtttcaaaaaaacagggaacaactggcaattcgttgcttatctcttct
gataagaagccattagacaccaagcaagtgaatgtgactgccccactcgcaacagcacca
agtttagcactgacaggaaacacaaaacctgcagaaactttcagcttttctactgtcaat
aacgaaggcacgaatccaacaggaagcaaggcacctagtggattagctccttccttgcaa
caaagcagcaacagttttggaaacaaccaaagtggtaaaggaggcctggattcaatccaa
tcagtgggaacatttggtggatctcaaaactccaataaggatggtgctggctttggtttc
aaatcatcattgttcgcctctagtggatctgtccctgccaagatcggagaaaggagtgaa
gctggttttggaaatccttcgccgcaaaccagctacactgctgataggaaagtatttggt
cctccagttgccttaagttctggacctttaccatccatatctccagctaaaccttcccta
attggatcttcatcaagtgggtatcggacaggaaactctgaagcacctcaatcattgcat
ggatcacctccatcacagcaaactataggcaaatcacataacagcaggacgcaagcacca
gtagactattctagaaactccaatatgggcacaatattcgattctcaagaagacttgtct
aagaagttgtacagtataaatgaaatgacaaaggaattagatgccctactagcatacata
gaaaaagatggtggtttcagagatgcttgcataaccttccagcagcgtcctctttctgtg
tttgaggatggtttgcaaaactttatggagttgttgcaggtctttaagaataaagtagag
ggacaatgttcaaaaattgaagatctgaggaacaagatgtttcaagtttctgctaggcaa
gcttacatgaaaggaattgtcagccagtcttcagatactcagtactgggacatatggaac
cgtcagaaattgagtccagaattcgaagtaaagaggcaaaatattctcaaagctaaccag
aatttgacaaatcagctggtcgagctagagaggcacttcaataatctggagatgaacaga
tccagtgaaacaggaagattggcttctagtcgtagagctgtttattccaataagtcaagg
gcgagtcaaacacaattatctagtgtgtgcaatgcactgaactcacaattggcagcagct
gagcaactatctgaatgcctctcaaaacagatatctgtgttaaatataggttctcctact
acgaagcgaggggcagtgaccaaagagttgtttgaatcaattggtttagcccacacaact
gacgcaaccaaatttttaggcagcactccttctaagtccattaagcggtttccatcagtg
aatgagcattcaaagggagtattagggccttccaagagtgctgaacctgagactgcacga
aggaggagagaatcactggatatgagcctggctagtttggaacctcagaaaactactgtt
aaaagaatagcacaacaacaacgcctcaagatcagcagtgatctgccattcagatcaaac
aagaaaatatttgattctcaaatggcagctatatcgcaggaaaagccaagcgatagctcc
aactcctctatagtagaatcatatgcaagcagactgcgttctcctagtgaagatgtaaaa
gcaaaaccatcaggatcccaacaaaactcgttgttcaaatgggtcaaggaatcaactggg
ccaactcaaagctcagagcaaaagcattttgagttaccagggcaaatgaaaagcactgct
caatcttcaaaattggcaccatcttcaccggcattcagttacacacataagggtgcacaa
gatagtatcagtccatccaatgtttcatcttttggaacgacacatattgtgcctaagtca
aatactttaaccttcaaaaccactataacccctaaaagtaatgccaacacggagccaaat
ataccttccatggcaacagcaaaaactcctcagagtccactgtctgtgaaaactctaact
ggggagtctggagattcgtctacattagctatgaagaacagacaggataatcaggcaatg
ccatctttggggaacactaaaggatcgggtcctccacagagcaagggtgacatatttaga
gatcttagcaaatcatcttttacttctgaacattccaagcctgctgtattacatgagaag
actggtcagcttagcaggattagtgatgctgtgcagaacacggtgaaagatacacccaag
gtggcatctcaacctcctgcgttctctccaacgcctgttacacaaaccaattcatattcc
ataaagccaactgtttcctcttcagctacatcagcctcgtcaggtatgcaagcatcagct
gcaaagacttcggatattttgtctagctcaatgcagaaatcaacgccaaaagtttctcca
ttagtacctgaggataatgtgtctagctccctacaatccatcccaacacctgttaaggat
ttgtcaactggcttgggtaaaaatgcagccaaacctgaaacacttacatcagaggtaact
agagccatagttcctgcaagtatggcttcagtcatatcgaccactgaaagcaagccttca
tcgcctccaacaactggtgccaacttgccttctactccagtccctgctcctaaaacagca
cctacaacagcagaatctgttgtcacttctacaggaaaagatgtcggaccaaacaacaac
tcaaccgatgaagatgatatggaagaggaggcgccttctgcaagtgccgaactcaatttg
ggagcccttggtgggtttggactcgggtctcagccttcttcaagtcctcaaaagtcaaat
ccttttgggacctcctttggtacatctgaaaataaaagttctggcacgccatttgctttg
acaaccagtccagggcagcttttccggccagcatcactaagcattccttcagcccagcca
gcccagccatctcagtcaactagctctagtgccttttctagtacgttctcaagtgggttt
actggatttggacagcctgcacaacttggatctgttcatcaggcaggatttgggcagcca
gcacaaattcagtccggttttggtcagccagcacaaattgtatctgggccgcagtcagga
tttgggcagcctgcacaaattggggttggccagcagtcagggtttgggcaacctgcacag
tttggtgctcaacaggcgcttgggtcagtgctgggttcttttggacaatcgcgccagcta
ggaggcgtaggttctggaggatttggtggatttgctagtgctgctacacccgggggcttt
ggttctttatcttcaaacaatgctggatttgctggtgctgcagcaggtgggggcttttcg
gcacctgctgcttctgcaggtggcggttttgctgctgctgctactggtggaggttttgct
gctcttgcctccaaaagtggcggtttcgctgctgcagcttcatctggtggcggtttcgct
gctgcagcttcatctggtggcggtttcgctgctgcagttccatctggtggtggttttgct
gctgcagcttcatctggtggtggctttggaggtgccacgcagggcagtggctttggcagt
ggtggtggattcgggtcctttggtggtaatcaaggggctgggttctcggcgtttggagca
agtggacctggaagaccgccagctgatcttttgacacagatgagaaagtag
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integrated database retrieval system
