Setaria viridis (green foxtail): 117843827 Help Entry 117843827         CDS       T07951                                  Name (RefSeq) uncharacterized protein   KO K12867   pre-mRNA-splicing factor SYF1 Organism svs  Setaria viridis (green foxtail) Pathway svs03040   Spliceosome Brite KEGG Orthology (KO) [BR:svs00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     117843827  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:svs03019]     117843827    03041 Spliceosome [BR:svs03041]     117843827 Messenger RNA biogenesis [BR:svs03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      117843827 Spliceosome [BR:svs03041]  Complex B   Other components    Prp19-related factors     117843827  Complex C     117843827 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 PPR TPR_12 UTP6_C ARM_TT21_C ARM_TT21 Motif Other DBs NCBI-GeneID:  117843827 NCBI-ProteinID:  XP_034580434 LinkDB All DBs Position 2:complement(45578636..45583585) Genome browser AA seq 928 aa AA seqDB search MPSAAGPVAVASASAAAKAAATPAVGISPELYPSEDDLPYEEEILREPFKLKGWWRYLVA RAAAPFSKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPIDHPAYSSLNNTFERALA TMHKMPRIWVLYLTSLLDQRLLTRSRRAFDRALRALPVTQHDRIWPLYLRLASLPACPVE TSLRVFRRYLQFDPSHAEDFINFLITANRWQEAADRLASVLNDDGFRSVKGKTRHQLWLE LCEILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRGLFEKARDVFEEGV SSVVTVKEFSVVFEAYTQFEQSMLAAKLEAAEEEGAEDEDEGGSRKNGMDKLSKKFLEEF WLNDEDDTDLRMARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYV EAVKTVDPMKAVGKPHTLWVAFAKMYEKHSRLDSAEDIFKRATQVNYKAVDHLASIWCEW AEMELRHSNFDKAIELMRQATAEPSVEVKRRAAAEGNEPVQMKVHKSLKLWSFYVDLEES LGTLDSTRAVYERILDLRIATPQIILNYAYLLEEHRYFEDAFKVYERGVKIFKYPHVKAI WVTYLTKFVQRYKRSKLERARELFHEAVQQAPPDEKKPLYLQWAKLEEDYGLAKRAMNVY DEAVRAVPNSEKMAMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVLTMCMKFAELE RSLGEIDRSRAIYVHASNYADPNNSDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ THFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMAALERQLAPGPSTAPSAAQSTAPAS ANRMMSFVSAGVEAQAESSRQQAGNNEDIELPDESDDEEPDVQIAEKSVPAAVFGELGKR AAESQEESSGAQENEQLGALERIKRRRQ NT seq 2787 nt NT seq  +upstreamnt  +downstreamnt atgccgtcggcggcgggtccggtggctgtggcgtcggcgtcggcggcggcaaaggccgcg gccaccccggccgtcggaatctcgccggagctgtacccgtccgaggacgacttgccctac gaggaggagatcctccgggagccgttcaagctcaaggggtggtggcgctacctcgtcgcg cgcgccgccgcgccgttctccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctc ccggggagctacaagctctggcacgcctacctccgcgagcgcctcgaccacgcgcgcccc caccccatcgaccacccggcctactcgtcgctcaacaacaccttcgagcgtgcgctggcg acgatgcacaagatgccgcgcatctgggtcctctacctcacgtcgctcctcgaccagcgc ctgctcacgcgctcgcgccgcgccttcgaccgcgccctgcgcgcgctgccggtgacgcag cacgaccgcatctggccgctgtacctgcgcctcgcgtcgctcccggcctgcccggtcgag acgtcgctccgggtgttccgccgctacctccagttcgacccctcccacgcagaggatttc atcaatttcctcataactgcaaaccgctggcaagaggctgctgaccgactggcttccgtg ctcaatgatgatggcttccgctctgtcaaggggaagaccaggcaccagctctggctcgag ctctgcgagatcctcaccaagcatgctgatgaggttgctggcctcaaggtggacgccatc ctgcggggtgggattcggaagttcacagacgaggttggcaagctttggacctcgctggct gattactatgtcaggagaggccttttcgaaaaagctagagatgtatttgaggagggtgtt tcatcggttgttaccgtgaaggagttcagcgtggtgtttgaggcatatacacagtttgag cagagtatgcttgcagcaaagctggaggctgccgaggaagaaggggctgaggatgaggat gagggagggagcaggaaaaatgggatggataaactatcgaagaaattcctcgaggaattc tggttgaacgatgaggacgatactgatttgaggatggcaaggtttgagcggctgttggat cgcagaccagagcttcttagcagtgtgctgttgcgacagaacccacacaacgtggaggag tggcacaggagggtgaaactttttgagaaggatcctgcaaggcaagtagcgacctatgtt gaggccgtgaaaaccgtggacccaatgaaagcagttgggaaaccccatactctatgggta gcatttgcaaagatgtatgagaaacacagtcgtctagatagtgctgaagatatcttcaaa cgggctactcaagtgaattataaggcagttgaccacttagccagtatctggtgtgaatgg gcggaaatggagctgcgacacagcaattttgacaaggctattgagctgatgaggcaagca acagcagagccctctgtcgaggttaaacggcgagctgctgctgaggggaacgaacctgtc caaatgaaagtacacaaatctttgaaactgtggagcttttacgttgatctggaggagagc cttggaaccttggactctacccgtgccgtttatgagagaatattggatttacgaattgct actcctcagataatactcaattatgcatatcttcttgaggagcacaggtattttgaagat gcatttaaagtgtatgaaaggggcgtgaaaatattcaagtatccccatgttaaggccatc tgggtgacctaccttacaaagtttgtacagagatacaagagaagcaagttagaacgagca agagagcttttccatgaagctgtccaacaggctcctccagatgaaaagaagcccctatat ttacaatgggccaaactggaggaagactatggtcttgcaaaacgtgctatgaatgtttat gatgaagctgtaagggctgttcctaacagtgaaaaaatggccatgtatgaaatctatata gcacgtgctgctgagctgttcggcgttccaaggacaagacaaatatacgagcaagcaatt gaatctgggctcccagacagagatgttctgacaatgtgcatgaaatttgctgagctagaa agaagccttggagaaattgaccgctcgcgtgctatctatgtgcacgcatccaactatgct gatccaaacaattctgacttttggaagaagtggaatgactttgagatccagcatggtaac gaagacacttttagggagatgcttcgtatcaaacgtacagtggctgctagtcgcagtcag acacatttcatactaccggagtacttgatgcagagggatcagaggctaaacctggatgag gcagtcgacactctgaagcgtgctggcgttcctgaggacgagatggcagccttggaaagg caactagctcctggaccatccacagcaccttctgcagcgcaaagcactgccccagcctcc gctaacaggatgatgagctttgtcagtgctggagtagaggcgcaggctgagagcagcagg caacaagctggtaacaatgaggatattgagctgcccgatgagagcgacgacgaggagccg gatgtacaaattgcagagaagagtgttccagctgctgtgtttggcgagctcggcaagaga gccgctgagagccaggaggaaagctctggtgcccaagagaatgagcagctgggtgccctt gagaggataaagagacggcgtcaatag

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