Setaria viridis (green foxtail): 117843929
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Entry
117843929 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117843929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117843929
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117843929
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
117843929
NCBI-ProteinID:
XP_034580582
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Position
2:complement(2722760..2731294)
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AA seq
439 aa
AA seq
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MAGGCDSVVPDIKMKLEEQLVLNLCNPELRGNALAELSKKREMFPDLGPLIWHSFGTMVV
LLQEIMSVYPTLSPPTLSASVSNRACNVLALLQSVASHPETRDPFLKAEITEYLYPLLNT
TIDTRSFEYLRLTTLGVFGALVKVDDTEVVNSLLKSDIIHLCLRIMETGSELSKTVATFI
VQKIIIDEAGLQHICGTPERFFGIASVLASMVAEQPQPSTRLLKHIIRCYLRLTDDPRAR
TALQTNLPEALRDGTFDNCLGDDAVARLYLQQLLDNLAEPAGEAPPPVPGPAAAGVTHLG
SAPVAGGAPHPGPGPVAGASPRGSSQAGPSCAHQGPAPAAGGAPHPSPGPAAGASPGGSS
QAGPSRAHPGSASTAGGAPHPGPGPAAGASPGGSSQAGPSHAHPGSAPAAGGAPHPGPGP
VAGGSSGGSSQAGPSRRRR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaggctgcgactccgtggtgcctgacattaagatgaagctggaggagcagctt
gtgctcaacctctgcaaccctgagttgcgtggaaatgctctcgctgagctctccaagaaa
agggagatgtttccggatttgggtccactgatatggcactcttttggcacaatggttgtg
ctgctgcaggaaatcatgtcagtctatcctacactttcaccccctacattatccgcaagt
gtatcaaacagagcctgcaatgttctcgcactccttcagtctgttgcatcacaccctgag
acaagggacccctttttaaaagctgaaattactgagtacttatacccactcttgaacact
actatcgacaccagatcttttgagtacctgcgcctcaccactcttggtgtgtttggtgct
cttgttaaggtggatgatactgaagttgtcaattccctgctaaagagtgacatcattcat
ctatgcttgcgaatcatggagacaggcagcgagctttcaaaaacagtggctactttcatt
gtacaaaagatcattatagatgaagctgggttacagcacatctgtggcacccctgaacgt
ttttttgggatagccagtgttttagcaagcatggtggctgaacagcctcagccctccacc
aggttgctgaagcacattatccgctgctacctcaggctgacggatgatcccagggctcgt
actgcgctgcaaactaatcttcctgaggctctgagagatgggacattcgacaactgcctt
ggggatgacgctgttgcaaggctctacctccaacaactactggataatctggctgagcct
gcgggtgaagcacctcctcccgttccaggtcctgcggcagctggtgtaacccatctaggc
tcagctcctgtggcgggtggtgcgccacatcctggcccaggccctgttgcgggtgcaagc
cccagaggatcctctcaggcaggaccgagttgcgctcatcaaggcccagctcccgcggca
ggtggtgcaccacatcctagcccaggccctgcagcaggtgcaagccctggaggatcctct
caagcaggaccgagtcgtgctcatccaggctcagcttccacggcgggtggtgcgccacat
cctggcccaggccctgcggcaggtgcaagccctggaggatcctctcaagcaggaccgagt
catgctcatccaggctcagctcccgcggcgggtggtgcaccacatcctggcccaggccct
gtggcgggtggaagctctggaggttcctctcaggcagggccgagccgcaggcgccgttga
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