Setaria viridis (green foxtail): 117844004
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Entry
117844004 CDS
T07951
Name
(RefSeq) protein argonaute MEL1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117844004
03036 Chromosome and associated proteins [BR:
svs03036
]
117844004
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117844004
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117844004
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
117844004
microRNA pathway
RISC loading complex
117844004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Piwi_N
Motif
Other DBs
NCBI-GeneID:
117844004
NCBI-ProteinID:
XP_034580683
LinkDB
All DBs
Position
2:complement(5540684..5548125)
Genome browser
AA seq
1045 aa
AA seq
DB search
MASRGGGGGGGGCGGAGGRGPGGRGGEGGGRGVGGRGGGAGHQGPYGRGGGGGGYQQPYG
RGGRGGWYQQPYGRGGGGGRGAGGGHPQQPPFGRREGGGGPGRGRVEAPAAPRPAAPVAV
PAAAASTSARPPAPASASSTAPAPAPAPAPPGPAAAAAAAASALARGMGRLAVADAGPAP
PAPSGRSAAQPPAHQPPAAPPAAPPAAPPVSSKGIAHPARPGIGTVGRKVLVRANHFLVK
FADNDICHYDVSISPEPKVRRTNRVLLSELVKVHGASLAHQMPAYDGSRSLYTAGELPFK
SMDFVVKLGRREIEYTVTIRYAARANLCHLQQFINGQQRDSPHDAIQALDVVMRESPSLN
YVTVSRSFFSKQFGTGNIGEGLEFWRGYYQSLRPTQMGLSLNIDTCSTSFYKSIPVVQFV
DEFLRVTNPMQPFSDRDRLKIKKALRGVRVETTHQQGKRSIYKITGITSVPLAQLSFSCN
DGPQLTVVQYFEQRYKYRLQYTAWPCLQSGKDSKPIYLPMEVCEIIEGQKYPRKLSDPQV
ASILKATCKRPQERENNIIQMVGRNNYSADRLAQAFRITVANHMVEVQARVLPPPVLKYH
ESGREKTVAPSVGKWNMINKKMVNGRTVDRWTCLSFSRMVHHDVVRICYDLVHMCKSIGM
DFNATPVIEVQSASPNNIEAALRNVHINAPNLQLLIVILPEISGHYGKIKKLCETELDIV
SQCINPKSPKNKQYFENVALKINVKVGGCNTLLEMPKGIPFVPDAPTIIFGADVTHPVAG
EDSSASIAAVVASMDWPEITTYKALVSAQEHRQEIIQNLFWTTTDPEKGTAVNGGMIREL
LLSFYKKTGQKPKRIIFYRDGVSEGQFSHVLLYEMDAIRKACASMEQGYLPPVTFVVVQK
RHHTRLFPDHRRRDLTDRSGNILPGTVVDTDVCHPSEFDFYLCSHAGIQGTSRPTHYHVL
YDENHFSADALQMLTNNLCYTYACCTRSISVVPPAYYAHLAASRARYYDEQAEGADGASV
ASGGPAAFRQLPQVKDKVKEVMFFC
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcgtggcggaggaggaggtggcggtgggtgcggcggggccggagggcgaggc
cctggtgggcggggcggcgagggcggagggcgtggggtcggcggccgcggcggcggggcc
gggcaccaggggccctacggccgcggcggcgggggaggcgggtaccagcagccctacggc
cgcggcggcaggggaggctggtaccagcagccctacggccgcggcggcggcggaggccga
ggcgccggtggcgggcacccgcagcagccgccgttcgggcgcagggagggcggaggcggc
cctggccgcggccgcgtggaggcacccgccgcgccgcgtcctgcagcgccggtggccgtc
cccgcggcggcagcctcgacttccgcgcggccgcctgcgcccgcgtccgcttcgagtacg
gcgccggcgccagcgccagcgccagctcctcctggccccgcggcggcggcggcggcggct
gcaagtgctctggcgaggggcatggggaggctggccgtggcggacgcgggccccgctccc
cctgcgccgtcaggtagatccgcggcgcagcctcccgcgcaccagccgccggccgctccg
ccggccgctccgccggccgctccgccggtgtcgagcaaggggatagcgcacccggcgcgc
ccggggatcggcacggtggggaggaaggtcctcgtgcgcgcgaaccacttcctcgtcaaa
ttcgccgacaacgacatatgccattacgacgtttcaatcagtcctgaaccgaaggtaaga
agaaccaacagggtgctgctttcggagcttgttaaggtgcacggtgcgtctcttgcccac
cagatgcctgcttatgatggaagcaggagcctgtacactgcaggcgagctgccattcaaa
tcaatggattttgttgtcaagttgggacgccgagaaattgagtatacagtgacaattcga
tatgcagcacgggcaaatttgtgccacctgcagcagttcatcaacggtcagcaaagggac
tcgccacatgacgcaatccaagcacttgatgttgtcatgagggagtctccttctctcaat
tatgtcactgtttctagatccttcttttccaagcagtttggtactgggaacattggtgag
gggctggagttttggagaggatactaccagagcttgcgccccactcaaatgggcctctcg
ttgaacattgacacatgctcgacttcgttttataaatctatccctgtggtacaatttgtt
gatgagtttctgcgggtgaccaaccccatgcagcctttttcggacagggatcgtttgaag
attaagaaagccctgcgtggagttcgtgttgagaccacacaccagcagggcaaaaggagc
atctacaagataactgggattacttctgtcccattggcacagctgagcttttcttgcaat
gatggccctcagctgactgttgttcaatactttgagcaacggtacaagtaccggttgcaa
tacactgcttggccctgcctgcagtccggcaaagattctaagccgatatatttaccgatg
gaggtgtgtgaaattattgaagggcaaaaataccctaggaagcttagtgacccacaggtg
gccagcatactgaaggcaacctgtaaacgtccccaagagagggagaacaatatcattcaa
atggttggccgcaacaactattctgctgatcgcctggcacaggcgttcaggatcactgtt
gccaatcatatggtcgaggtgcaagcgcgtgtgctgcctccacctgtgctgaaataccat
gaatccggaagggagaaaactgtggcaccaagcgtcgggaagtggaatatgattaacaag
aaaatggtcaatggtagaactgttgacagatggacttgtttgagcttttcgcggatggta
catcatgatgtagtcagaatatgctatgacttggttcatatgtgcaagtccattggcatg
gatttcaatgcaacgccagtgatagaagttcagtcagcttctcccaacaacatagaagct
gctctaaggaatgttcacattaatgctcccaatctccagctgcttattgtgattcttcca
gaaatttctggtcattatgggaaaattaagaagttgtgtgagactgaacttgatatagta
tctcagtgcataaatccaaagtccccaaaaaacaagcagtattttgaaaacgtcgccctt
aaaatcaatgtgaaggttggagggtgcaatacactgcttgagatgcctaaaggaatacct
tttgtcccggatgcaccgacaatcatttttggtgctgatgtgacccatcctgtagcagga
gaagactcatcagcatctattgcagctgtggtggcatccatggactggcctgaaataaca
acctataaagctctggtctctgcccaagagcataggcaggaaattatacagaatctcttc
tggaccactacagatccagagaaaggcaccgcagtaaatggtggaatgataagggagttg
ctgttatcattctataaaaagactggccaaaagcctaaacggattatattttacagggat
ggagtaagtgaagggcagttcagccatgttttgctctatgaaatggatgcaatcaggaag
gcttgtgcttctatggaacaggggtatctacccccagtgacatttgtagtagtacaaaaa
aggcaccacacaaggctcttccctgatcatagaaggcgtgatctcacagatagaagtgga
aacattcttcctggaactgtggttgatactgacgtttgtcatcccagtgagtttgatttc
tacctttgtagccatgcaggaattcagggaacaagcaggccaacacattatcatgtcctg
tacgacgagaaccatttctcggctgatgcgctgcagatgctcactaacaacctgtgttac
acatatgcatgctgcacgcgctctatctcagttgttccaccggcctactacgcccacctg
gcggcttcccgcgcaaggtactacgacgagcaagcagagggcgccgatggagcctctgtc
gccagtggcggtccagctgcgttccgccagctaccgcaggtcaaggacaaagtgaaggaa
gtgatgttcttctgctga
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integrated database retrieval system
