Setaria viridis (green foxtail): 117844731
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Entry
117844731 CDS
T07951
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117844731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117844731
03016 Transfer RNA biogenesis [BR:
svs03016
]
117844731
Enzymes [BR:
svs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
117844731
Messenger RNA biogenesis [BR:
svs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
117844731
Transfer RNA biogenesis [BR:
svs03016
]
Prokaryotic type
tRNA degradation factors
117844731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
117844731
NCBI-ProteinID:
XP_034581394
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All DBs
Position
2:complement(3871318..3881492)
Genome browser
AA seq
896 aa
AA seq
DB search
MLAGPAALHLLLPAPPPHRRHLAFALPQQHPEPPLHASLPRAACSRRRARRRAPAQRHVV
VRASAAVAEEESSSGPSKFSVRIPVGDREILVETGHIGRQASASVMVTDGETILYCSVCL
SDSPNDPSDFFPLSVHYQERLSAAGRTSGGFFKREGKAKDHEVLVCRLIDRPLRPTMPKG
FYYETQVLSWVFSYDGIHSPDCLAITAAGIAVALSEIPNKQTIAGVRVGLINGQFVINPT
TEQMENSELDLMMAGTDSAILMIEGYCDFLTEEKLLEAVEAGQVAIREICKAIDVLVQNC
GKKKMVDAIALPPPELYRHVEDISGDELVKALQIKEKIPRRKALSAVEEKVITILSEQGY
VCKDISSGVAESLDDIVEDEDEDEVIVDGEVDEGDVHIKPVSRKPPRQLFAEVDVKLVFK
EVSSKYLRRRIVEGGKRSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGG
YQMAQRIDNLVDTEESKSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPL
EEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGG
DGSPLILSDITGAEDASGDMDLKVAGNESGITAFQMDIKVVGITLPVMEQALLQARDGRR
HILNEMSKSSPPPSKALSPHAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTG
DDGTVKITARDLSSLEKSKTIIANLTMVPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLC
HISELSSGWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPNADSESNSKQQTSSS
TKEKVPQKDDLIKMTTRRARRKKQSEPSGAENATTKTLEKSAAASATSQGSETAKK
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgggccccgccgcgctccacctcctcctcccggcgcctccgccgcaccgccgc
cacctcgcgttcgcgctcccgcagcagcaccccgagccgccgctccacgcctcgctcccg
cgcgccgcgtgctcgcgccgccgcgcgcggaggagggcgccagcgcagaggcatgtcgtt
gtcagggcatccgccgcggtcgcggaggaggagagcagctccggaccgtccaagttctcc
gtcaggatcccggtcggcgaccgcgagatactggtggagacgggccacattgggaggcaa
gcgagtgcttctgtaatggtcacggacggggaaacaattctctactgttctgtttgtctg
tccgattctccaaacgacccttctgactttttccctttatcggttcactatcaagagcgc
ctttcagctgctggaagaactagtggtggtttcttcaaacgagaaggcaaggcaaaagac
catgaggttttagtatgcagattgatagacaggcccctacgacctactatgcccaagggt
ttctactatgaaactcaagttctatcctgggtcttcagttatgatggcattcactctccg
gattgcttggctatcacagctgctggtatagccgtggctctctctgaaattccaaataaa
caaacaattgctggggtaagagttggcctgattaacggccagtttgttattaacccaact
actgaacaaatggagaattcagagttggatttgatgatggctgggactgatagtgccata
ttgatgattgagggctactgtgatttcctgactgaggagaagctgctagaagctgtggaa
gctgggcaggtggcaattcgagagatctgcaaagcaattgatgttcttgtccagaactgt
ggaaagaagaagatggttgatgctattgccttaccacctcctgaactctacaggcatgtt
gaagatatttctggtgatgagttggtgaaggcattgcaaataaaagaaaagattcccaga
aggaaagctctttcagcagtggaggagaaagttataactatactttctgaacagggttat
gtttgcaaagatatctcatcaggagttgctgaaagtttggatgatattgtagaggacgaa
gatgaggatgaagttatagtggatggagaagtagatgaaggtgatgttcacatcaagccg
gtttcaaggaagccccctcgtcagctatttgcagaagttgatgtcaagctagtcttcaag
gaggtttcatctaaatatttacgacgacgcattgtagagggcggaaagcgaagcgatgga
cggagtccttgggaacttcgacccattaattctcaatgtgggttacttccacgagcacat
ggtagtgctctgttcacgaggggagaaacacagtcactggctgtggtcactttaggtggt
tatcaaatggcacaacgaattgacaaccttgtagacaccgaggaatcaaaaagcttctat
cttcagtactcatttcctccatcatgtgttggtgaagttggtcgaattggagcacctagt
aggagagagattggacacggtatgcttgcagaaagggcactggagccaattttacctctg
gaagaggattttccttacactattcgtgtcgagagtactatcactgaaagtaatggctca
tccagcatggcttctgtttgtggaggttgtttagcacttcaagatgctggggttcctata
aagtttcctgttgctggaatagcaatgggcttggttcttgatacacaagaatttggtggc
gatggtagcccacttatactttctgatattactggagctgaagatgcctctggtgatatg
gatttgaaggttgctggtaatgaaagtggtataactgctttccagatggacatcaaggta
gttgggataactctacctgtgatggaacaagcactccttcaggctagggatggtagacgg
catattctgaatgaaatgtcaaaatcttcacctccaccatcaaaagcactatctccgcat
gctcccttaattcacgtcatgaaggtcaaacctaacaaggtgaatttaataattggttct
ggtggaaagacaataaaaagtataattgaggagactggggtagatgctattgatactgga
gatgatggcacggtaaaaattaccgcaagggacttatcaagcttagagaagtcaaaaact
ataatagctaaccttaccatggttccaaaagttggggaaatttacaggaattgtgagatc
aaatcaatagctccatacggtgcctttgttgaaattgctccaggacgtgagggtctatgt
catatcagtgagttaagttcgggctggttggccaaggctgaggatgctttcaaagtaggt
gatcgcatagacgtcaagcttattgagataaatgacaagggccaactacgactaagttct
cgagctttgcttcctaatgcggattcagaatccaacagcaagcagcaaacaagcagctca
acaaaagaaaaggtgccgcaaaaagatgatcttatcaagatgacaacaaggagagccagg
cgtaagaaacagtctgagccgtcaggagctgaaaatgccacaacgaagactcttgaaaag
agtgccgctgcttcagctacttcacaaggcagtgaaaccgcaaagaagtag
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