Setaria viridis (green foxtail): 117844756
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Entry
117844756 CDS
T07951
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117844756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117844756
03110 Chaperones and folding catalysts [BR:
svs03110
]
117844756
03029 Mitochondrial biogenesis [BR:
svs03029
]
117844756
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117844756
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
117844756
Messenger RNA biogenesis [BR:
svs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
117844756
Chaperones and folding catalysts [BR:
svs03110
]
Heat shock proteins
HSP60 / Chaperonin
117844756
Mitochondrial biogenesis [BR:
svs03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
117844756
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117844756
Exosomal proteins of other body fluids (saliva and urine)
117844756
Exosomal proteins of breast cancer cells
117844756
Exosomal proteins of colorectal cancer cells
117844756
Exosomal proteins of bladder cancer cells
117844756
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
117844756
NCBI-ProteinID:
XP_034581429
LinkDB
All DBs
Position
2:14070569..14075168
Genome browser
AA seq
705 aa
AA seq
DB search
MASADIAATQIKEEEERGKQIKPPVAKTLTLCSSLFSLAASLPPSSRTRGTSLPRRLTAP
RLPSPTPAKAPSRGDSSAPASASRAPGASTRPIGSYSPAGCRCSAPGVPQYSFLPAAPMY
LNAVSLAAAAAFSSSSQQLLPRPARVAPRRRLVLRADVKVISTGEACRRGLAAGIDKLAD
AVAVTLGPKGRNVVIDQDDVPKVINDGVTIAKAIELPNALEHAGASLLQEIASKTNSAVG
DGTTTAIVLAREIINLGLLAVATGANPVALRRGIDKAVHELIKILKSKCIPVSTKEDIKA
VASISSGNDEYVGNLIADALEKIGPDGIIKIESSSSIYTTVEVQEGMKIDKGYVSPHFIT
NHDKAIVEFENARVLLTDQRVNEVQEILPLLEKTTQLSVPLLIIAEDVSHTVYSTLVLNK
LNGLLNVAVVKCPGLGDEKKAILQDIAIMTGADFFASDLGWGLHGITSDQLGMAQKITIT
SESTTIIAHPSMRPEIEARIMQLKKDVEETTSSYLRERFSARIAKLSRGVGVIKVGAATE
AELEDRKLRVEDAKNATFAAISEGITPGGGVTYVHLSKHIPSIMDLVDDPEEKMGVNIVG
KALLVPAMTIARNAGADGSAVVEKLLASEWRVGYNAMTDKFEDLVTAGVVDPCRVARCVL
QNSASIAGLILMTQAMMFDKIKKKKSPIPEIPGIPPLQISQKTKV
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgcagatattgcagcaacacaaataaaagaagaggaagaaaggggtaaacag
ataaaacctcctgtcgctaaaaccctcacactctgttcttcactcttcagcctcgccgcc
tcgcttcccccctcttctcgaacgcggggtacctcactacctcggcggctcacagcgcca
cggctcccctccccaacccccgcaaaggcacccagccgaggggactcctctgcccccgcc
tccgcctcccgggctcccggcgcctctacgcggcctatcggatcgtattcgcccgccggc
tgtcgctgctcggccccgggcgtgcctcagtattcgttcctgccggccgctccgatgtac
ctcaacgccgtttccctcgccgccgcagccgccttctcgtcctcatcccagcagctgctt
cccaggccggctagggtcgctccccgccgccgcctggtgttgcgggcggacgtcaaggtc
atatctaccggcgaggcctgccgccgcgggctcgccgccggcatcgacaagcttgccgac
gccgtcgcggtcaccctcggccccaaagggaggaatgttgttattgaccaagatgatgtc
cctaaagtaattaacgatggtgtcacaattgccaaggcgatagagctcccaaatgcgctc
gagcatgcgggtgcctcgctacttcaagagatagcatccaagacaaatagtgcggttggc
gatggaactacaacagcaattgttttggctcgggaaatcatcaatcttgggttgttggca
gttgccactggtgctaacccagttgccttgagaaggggtattgacaaagccgttcacgag
ctaattaagatcttgaagagcaaatgtattcccgtgagtacaaaggaggacataaaagct
gttgcttcaatatcatctggcaatgatgaatatgttggcaatctcattgctgacgcattg
gagaagataggtcctgatggtataataaaaattgagtcatcatcttcgatatataccaca
gttgaggtgcaggaaggaatgaagatagacaagggatatgtttctccacatttcatcaca
aatcatgacaaagcaatcgttgaatttgaaaatgctagagtgctcttaactgatcagcgt
gtgaacgaagtccaggagatacttcctttgcttgagaagacgacacagttgagtgtccct
ttattaattattgctgaggatgtgtcgcatacagtgtattcaacccttgttcttaacaaa
ctgaatggattgctaaatgttgcggttgttaaatgccctgggttgggagatgaaaagaag
gctattctccaagatattgctattatgacaggtgcagatttctttgccagtgaccttggc
tggggtcttcatggcattacttctgatcagctaggtatggctcagaagatcacaataact
agtgaatcaacgactatcattgcacatccttcaatgagaccagagattgaagccagaatc
atgcaattgaagaaagatgtagaggagacaacgagttcctatcttagagaaaggttctct
gcaagaattgctaaactctcacgtggtgttggagttattaaggttggggcagccactgaa
gctgaacttgaggataggaagctgagagtggaggatgcaaagaatgcaacttttgcagcc
attagtgaaggcataactcctggcggtggtgttacatatgttcatttatcaaagcatatt
cccagtatcatggatcttgtggacgacccggaagagaagatgggtgtaaatatagttggg
aaggcacttcttgtacctgctatgacgatagctcgcaatgccggggcagatggttcagct
gttgtagagaagcttctcgccagtgagtggcgagttgggtacaatgcgatgactgacaag
tttgaagaccttgttactgctggtgtggtagacccatgcagggttgccagatgcgtgctc
cagaactctgcttctatcgcaggactaatccttatgacccaagctatgatgtttgacaaa
ataaagaagaaaaagtctcccattccggagattcctggcattccaccgttgcaaataagc
caaaagactaaggtttga
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