Setaria viridis (green foxtail): 117844804
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Entry
117844804 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117844804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117844804
03400 DNA repair and recombination proteins [BR:
svs03400
]
117844804
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117844804
Messenger RNA biogenesis [BR:
svs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
117844804
DNA repair and recombination proteins [BR:
svs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
117844804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-GeneID:
117844804
NCBI-ProteinID:
XP_034581483
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All DBs
Position
2:47054456..47063143
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AA seq
895 aa
AA seq
DB search
MEAALKGYFGYSSFRPYQREIIQKVLDGRDCLVVMATGSGKSICYQIPPLVTKRTAVVVS
PLLSLMQDQVMSLKQKGVKSEYLGSTQTNSSASSDAEKGIFDVLYMTPEKAISLPSRFWN
NLQAAGICLLAIDEAHCISEWGHDFRVEYKQLHLLRDLLVGVPFVALTATATERVRKDIS
TSLVLRNPHVVVGSFDRHNLFYGVKSCNRSISFISELVKDVSKRSAVGESTIIYCTTIRE
TEQVHEALVTAGIKSGIYHGQMGSRAREESHRSFIRDEVLVMVATIAFGMGIDKPDVRCV
IHYGCPKSLESYYQESGRCGRDGLSSVCWLYYQRSDFTKADFYCAEAKNGTQRKAIMDSF
MAAQKYCLLATCRRRFLLQYFGEELNSDCGNCDNCTAVKNVRDLSKETFLLLSCIKSCGG
RWGLNLPIDVLRGSRAKKIVDNNYDKLQMHGRGKDYSPNWWKALGGLLIAHDYLKETVRD
TFRFVSVSPKGVKFLSTADKMDGTPLVLQLTAEMIDLEEHGSSQHKEGGGLNLVPTLESE
KFSEDESKLYQMLLNVRMKLAQDIGTAPYAICGDQTIRNFAKMRPSTGARLANIDGVNQH
FISRFSGIFIQNITQLSKELNLPLDNSPLPPPPPTNPAVENIAGLPKPVQNNLPGILGDA
KLTAWELWQKQEFSFLKIAYFRRAVPIKEQTVIAYILDAAREGCEVDWSRFCREVGLTPE
IASGIQLAIAKAGSRDKLKPIKEELPENVTYDMIKTFLTIEGRGLSEQVFGSAPASSHAT
EAGGDDNPGDGVLTADTLDANPSAKRGCQTDGMIGSADQPAMKQQKIEEHGVESSGTTVA
TEESVLELVASRDGVLLDEVVKHFNGSKRESVVEILDSLESEFEIYKKNGKYKIM
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcgctgaagggctatttcggctactcgtcgttccgaccgtaccagagggag
atcatacagaaggtcttggatgggcgggattgcctcgtcgtcatggccaccggcagcggc
aagtccatctgctatcaaatacccccactggttacaaagaggacagctgttgttgtaagc
cctcttctgtccctgatgcaagaccaggttatgagtttaaaacaaaaaggtgtgaaatct
gagtacctgggcagcacccaaacaaatagctcagccagcagtgatgctgaaaaaggcata
tttgatgtactatacatgacaccagagaaagccatttcacttccttcaaggttttggaat
aacttgcaggctgccggaatatgcttgctggccattgatgaagcacattgcatatcagaa
tggggacatgatttcagggtggagtacaagcagttgcatttattgcgcgaccttcttgtg
ggtgttccctttgttgctttaactgccacagccactgaaagggtacgcaaagatatttct
acttccttggttctgcgcaatcctcatgttgttgttggatcgtttgatcgtcacaacctt
ttctatggtgtgaagtcatgcaaccgatctatatcctttatcagtgaacttgtgaaagat
gtttcaaagaggagtgctgtgggtgagtcaacaataatatattgtactaccatccgggag
acagaacaggttcatgaggcattggttactgctggaatcaagtctggaatttaccatggt
caaatgggcagccgagctagagaggaatcccatagatccttcattagggatgaagttctt
gtgatggtggcaactatagcttttggaatgggtattgataaacctgatgttagatgtgta
atacactatggatgtccaaagagcctggagtcctactaccaggaaagtgggcgttgtgga
agggatggtctgtcttcagtctgctggctatattaccaaagaagtgattttacgaaagct
gacttttattgtgccgaggcaaaaaatggaacccagaggaaagcaatcatggattccttc
atggcagcacaaaaatattgcctccttgctacatgccgcagaaggttcttattgcagtat
tttggcgaagagctcaactccgactgtggtaactgtgataactgcacagcagtgaaaaat
gttagagatttgtcaaaagaaacttttttgttgctgtcgtgcatcaaatcttgtggagga
cgctggggccttaatttacctattgatgttctccgtggatcacgagcgaagaaaattgtt
gacaacaattatgataaactacaaatgcatggacgaggtaaagactactcaccaaactgg
tggaaagcacttggtggcctccttatagcacatgattacttgaaggagactgtccgtgat
acatttagatttgtcagcgtcagtccaaaaggggtcaagtttctctctactgctgataaa
atggatggaacaccactggttttacagctgactgcagagatgattgatctagaggaacat
ggtagttcacagcacaaagaaggtggtggtttaaatcttgtgcccacattagagtctgaa
aaattttctgaggatgaatcaaaactctatcaaatgctcctcaatgtcaggatgaagctt
gctcaagatattgggaccgctccatatgctatatgtggtgatcagacaataagaaacttt
gcaaagatgaggccttcaactggagctagacttgctaatatcgatggtgtcaaccagcat
tttatctcgcgtttcagtggcattttcatccaaaatatcacacaattgtcgaaggagtta
aaccttccattggataattcaccattaccaccaccaccaccaacaaatccagctgtggaa
aatatagctggtttaccgaagcctgtacaaaacaatcttccaggtatcttgggtgatgca
aagttgactgcatgggaattgtggcagaagcaggagttttcattcctgaaaatcgcatat
tttcgcagagccgtgccaataaaagagcaaacagttattgcctacatacttgatgctgct
cgagaaggatgtgaggtggattggagtaggttttgcagggaggtagggctgacacctgag
atagcctcagggatccaacttgcaattgcaaaggctggatcacgtgacaagttgaagcca
atcaaagaggagctcccagagaatgtaacttacgacatgatcaagacattcctgacgatt
gaggggcgtggattgtcagagcaagttttcggtagtgcacctgcttcctcccatgcaacc
gaagccggcggagatgataatccgggagatggtgtcctaacggctgatactcttgatgca
aacccttcagcaaagagaggctgccaaaccgacggcatgattggttctgctgatcagcca
gcaatgaaacagcaaaagatagaagagcatggagttgaatcttctggcacaactgtcgcc
actgaagaatctgtgctagagcttgtcgccagccgcgatggggtgttattagacgaagtt
gtcaagcacttcaatggatccaagagagaatcagttgttgagatattggacagcctcgaa
tccgaattcgaaatttacaagaaaaatgggaaatacaagatcatgtaa
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