Setaria viridis (green foxtail): 117844856
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Entry
117844856 CDS
T07951
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03020
RNA polymerase
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117844856
09124 Replication and repair
03420 Nucleotide excision repair
117844856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117844856
03400 DNA repair and recombination proteins [BR:
svs03400
]
117844856
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117844856
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117844856
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
117844856
NCBI-ProteinID:
XP_034581555
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All DBs
Position
2:16069987..16076864
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AA seq
325 aa
AA seq
DB search
MDRPAAGSSYQRFPRVRIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIE
VNSSVLNDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFNLSARATDSD
QTLEVTSNDLRSADPKVCPVDQARAYQLALSGNDYDPNAERGILIVKLRRGQELRLRAIA
RKGIGKDHAKWSPAATVTFMYEPDILINEELMDTLTFDEKRSWVESSPTKVFDLSANGKV
TVCDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITVLR
QKLDAIGLQDDDGDLGELGAHLGGP
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtcctgcggccggctcgtcgtaccagcgcttcccccgcgtccggatccgcgaa
ctcaaggacgactacgccaagttcgagctccgtgacaccgacgccagcatagccaacgcc
ctccgccgcgtcatgatcgccgaggtccccaccgtcgccatcgacctcgtcgagatcgag
gtcaactcctccgtcctcaacgacgagttcatcgcgcaccgcctggggctcatccccctc
acctccgccgccgccatgcaaatgcgcttctccagggactgcgacgcctgcgacggtgac
ggctcctgcgagtactgctccgtcgagttcaacctctccgcgcgcgccaccgactccgac
cagacgctcgaggtcacctccaacgacctgaggtccgctgaccccaaggtctgccccgtc
gaccaggcacgcgcctaccagctggcgctcagcggcaacgactacgaccccaacgccgag
aggggaatacttattgtaaagctgcgtcggggccaagaattgaggcttcgtgccattgct
aggaaaggaattggcaaggaccatgccaaatggtcaccagctgctaccgtgactttcatg
tatgagcctgacatacttatcaatgaagaacttatggatacattgacttttgatgagaaa
agaagctgggtcgaaagcagtcctacaaaagtatttgaccttagtgctaatggaaaggtg
acggtgtgtgacgccgaggcatacacctacgacgacgaggtgatcaagaaggcggaggcc
atgggaaagccaggcttagtggagatcaacgcaaaggaggacagcttcatcttcaccgtg
gaaacaactggtgccatcacagcctatgagctgatcatgaacgcgatcacagtcctgcgg
cagaagctggacgccatcggcctccaggacgatgacggcgaccttggcgagcttggcgcc
cacctcggcgggccttaa
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