Setaria viridis (green foxtail): 117845103
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Entry
117845103 CDS
T07951
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117845103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117845103
03036 Chromosome and associated proteins [BR:
svs03036
]
117845103
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117845103
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117845103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
117845103
NCBI-ProteinID:
XP_034581902
LinkDB
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Position
2:47671148..47677825
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AA seq
919 aa
AA seq
DB search
MFGSTNPFGQSSTSPFGQNSFGTQQGFGQATPAANNPFAPKPFGSPTTAFGAQTGGSPFG
TASTGAFGQQQSTPTFGTTSTGAFGQQQSTPTFGTPSSSPFGSTPAFGASPAPAFGATSS
TFGSGSLFGQKQSFGGFGSSPSQSSPFGSTFQQTQPTFGSSTFGASTPPAFGTTTTTAFG
ATAPAFGTSTPAFGTATTPAFGSTSTSLFGASSTPAFGSSTPGFGTSGSTAFGVGGTAPG
FGSSSTPSFGTSTNAFSFGSSPSFAQTAVSSGSSPFGTTSPFGVQTPAFGSQTAAPAFGQ
AQFGNQAGGTRIKPYAQTPDVDGATSATQPAAKLDSISAMPEYKDKSHEELRWEDYQRGD
KGGPNPSGTPSAAPIFPSLSTQQNAFAPTNNVFNQSTPNTIPTNNPFAPKPVSTSASPFN
SFNSTVASSSPFTSSTSTTMFGQTGVSPFQASSSPSLFANTTPFASSSLFGTSTTNNPNP
FGTVSSLANTQSAPLFQSAPAFAQQPSSTPAFSSGNLFSTPPGSLFGSGPSLFSTPTFQT
SAPVQTPNTFSFQPPTQPASTGGFPGFSNTANQALIGQQSPSQSNMVMQPASVSNPFGTL
PAMPQMSIGNGGSSPSVQYGISSLPVAEKPLPTRTLSMAVPRHLSQRRIKLLPRKYNPIS
DGKVPFFADDEESPATPKADAFFIPRENPRNLIIRPIEQWPSRSAINRQSVPKDPTDLDK
YEDTSTESGRDKTVKSPSGSPLVENGQQHEPRHHGNGKGTSVERLLPKLPQEDYFTEPSL
EELAAKERGEPGYCSRVKDFVVGRHGYGSIKFLGETDVMGLDLESIVEFNNREVIVYKDD
SKKPPVGEGLNKAAEVTLLNIKCMNKKTGEQYREGPRVERYRGMLMMKAEEQGAEFVSFD
AAKGEWKFRVKHFSAYGLW
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctccaccaacccatttgggcagtcatccaccagcccatttggccagaactca
tttggaacccagcagggattcggccaggctacacctgctgctaacaacccctttgcgcca
aaaccgtttggcagcccaaccacagctttcggggcacagactggaggctcgccttttggc
actgcatccactggtgcctttggccagcagcagtccactcccacatttggcactacatcc
actggtgcctttggtcagcagcaatccactcccacgtttggcaccccgtcctcctctcca
ttcgggagcactccggcgttcggtgcatcgcccgcccctgcctttggtgctacatcctct
acctttggctctggatctttattcggacaaaagcaaagttttgggggttttggatcatca
cctagccagtcaagtccttttggtagcacgttccagcaaacacaaccgacatttggcagc
agcacttttggcgcatcaactccgccggcattcggtaccacaactacgacggcatttggt
gcaactgcgccagcctttggaacgagtacaccggcctttggcaccgcaactaccccagca
tttggttcaacatcaacatctttatttggtgcttctagcaccccggcatttggttcatct
actcctggttttggaacttcagggagcacagcatttggtgtgggtggtactgctccaggt
tttggatcttcgagcacaccttcattcggcacatcaaccaatgcattcagttttggttct
tcaccatcttttgcacaaacagcagtttcctctggtagttctccctttggaacaacatca
ccttttggtgtgcagactccagcatttggctcacagacagcagcaccagcttttgggcaa
gcacaatttggtaatcaagctggaggaaccagaataaaaccttatgctcaaacaccagat
gttgacggtgctaccagtgctactcaacctgctgcaaaacttgattccatatctgcgatg
cctgaatacaaagacaagagtcatgaagaattgaggtgggaagactaccagcgtggagac
aagggtggaccaaacccttctggaactccatcagcggctcctatctttccatcattaagt
acacaacagaatgcttttgctccaacaaacaatgtatttaaccagtctaccccaaacaca
attccaacaaacaatccatttgctcctaagcctgtttcaactagtgcttcaccattcaac
tcgtttaacagtacagttgcaagttcgagcccattcacatcgtccactagtaccacaatg
ttcggacagacaggtgtttccccatttcaagcaagtagctcaccatctttgtttgcaaat
accactccttttgcttcatcatcgttgtttggcacatcaacgacgaataatccaaatcca
ttcggcactgtctcgtcattggctaacactcaatcggccccactatttcaatctgctcca
gcatttgcacaacagccatcaagtacaccagctttctcctctggaaacctatttagcaca
ccacctggcagtctgtttggcagcggaccttcacttttttcaacgccaacatttcagaca
tctgcccctgttcaaactccaaacacattctccttccaacctccaactcaaccagcttct
acaggtggtttccctggtttttccaacactgctaatcaggccctcattggacaacaatct
cctagccagtccaatatggtcatgcagcctgcttctgtttcaaatccatttgggacactt
ccagcaatgcctcagatgtccattgggaatggcggatcttctccttcagttcaatatgga
atatcaagtctgccggttgctgagaagcctcttccgactagaacattgtccatggcggtt
cccaggcatttgtcacagagaaggataaaattgctgccaagaaaatataatccaatatca
gatggcaaggttccattctttgctgacgatgaggaatctccagcaacaccaaaagcggat
gcttttttcatccctagagagaacccgaggaatctgataatccgtccaattgagcagtgg
ccttcgcggagtgcaattaacaggcaatcggttccaaaggatccaactgatttggacaaa
tatgaagatacatccactgaaagtgggcgtgataagactgtcaagtcaccaagcggcagt
cctctggtggaaaatggccagcagcatgaacccaggcatcatgggaatgggaagggtact
tcagttgagaggttgttgcctaagctcccgcaggaagattacttcacggagcctagtctg
gaggagcttgctgccaaagaacgtggtgagccaggctactgcagtcgggtgaaagacttt
gttgtggggcgccatggctatggcagcatcaagttcctgggggagacagacgtgatgggc
ctggatctggagtcaatcgtggagttcaacaaccgggaggtgatcgtgtacaaggatgac
agcaagaagcccccggtgggtgaggggctgaacaaggctgcggaggtgactcttttgaac
atcaaatgcatgaacaagaagaccggggagcagtaccgagagggtccgcgggtggagagg
tacaggggcatgctgatgatgaaggcggaggagcagggcgcggagttcgtgtcctttgac
gcagccaagggagagtggaagttcagggtgaagcacttcagcgcctacgggctctggtga
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