Setaria viridis (green foxtail): 117845226
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Entry
117845226 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
svs03015
mRNA surveillance pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117845226
09122 Translation
03013 Nucleocytoplasmic transport
117845226
03015 mRNA surveillance pathway
117845226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117845226
03041 Spliceosome [BR:
svs03041
]
117845226
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117845226
Spliceosome [BR:
svs03041
]
Complex C
Other components
EJC/TREX
117845226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAP
RSB_motif
Motif
Other DBs
NCBI-GeneID:
117845226
NCBI-ProteinID:
XP_034582078
LinkDB
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Position
2:complement(44729540..44735474)
Genome browser
AA seq
787 aa
AA seq
DB search
MLTYPILNNQPIDEWMVAELKDELQRRNLPVSGLKNDLVKRLFEAIQDKILDDGEKTNGG
IPPEELKGGETPGSVDASVNQASIKELVDEGASEVMKQGADLVISVTEAYDESILTTSEV
TQEAVVGTPEASQRSLDAVARVESSLVDRAATDETNGNGLESASSGDTIVEEANPRSDNH
CDTIEQTPEDDTNKKLAIDDIPSDGTGGDIKLGLNMHIKILEMGDVHAPPDDTVLRADPE
DADAVVAAEPEDDTSKKMTIDGVLSDANHTTVKLGVNVDCKIEQEKVPALPDAIELNADP
KGADVVVAAENMIPKDNFSVNTLMHGNGHGDFKCSNGDTKPFLCREKDQVSEVNPDLDSQ
TKCVSIFDDNISADKNNDLKGNLNADDCDLELDAKQEMIKPSSTIPSPGDLLEVLDVDKE
VHKIGATLQELGSTSNIDLDRDEESPDGSSIEKLNFDSCSGDESMDEDVLESKHIDSNIK
SDDLGEKTEFTSEHGLKEVSLLDTAAEDSSAHTKEVVVEEKPPSPAEKRKPEDQEVIANN
EPIKRQRLRNVNDVDISEQKAPKLTGTGTPKEVFHYAPSHSFGRPGTTASRDYPKERIVP
PAQKPATTSLRIDRFVRPFTLKAVQELIGKTGSVCSFWMDHIKTHCYVTYSSVEEAVATR
NAIYNLQWPPNNRNYLVAEFVDPEEVELKLEAPPPSQVPISLSTAIAPQAAPFQQPNANQ
TLPPQPAAALLPTPAPLAKLPPISGPGPAREMLLPPPPRNLEPPRTLDDLFKKTQAHPRI
YYMPLSE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgttgacatatcctattttgaacaaccagccaattgatgagtggatggttgctgagttg
aaggatgagcttcagcgaaggaatctacctgtcagtggtttgaagaatgatcttgtgaag
aggctctttgaggccatccaggataagatacttgatgatggggaaaaaacaaatggtgga
attcctcctgaggagctgaaagggggtgaaacccctggttctgttgatgcatctgttaac
caggcttcaatcaaagaacttgttgatgaaggtgcttcagaggttatgaaacagggggca
gatcttgttatctctgttacagaagcttatgatgaaagtatattaactacttcagaagtt
actcaggaggctgtggttggtactccagaagctagtcagagaagtttggatgctgttgca
agagttgagtcttctctagttgatagagcagcaactgatgaaaccaatggaaatggccta
gaatcagcttcaagtggcgacactatagtggaggaagcaaatccacgttctgataatcac
tgtgataccatcgagcagaccccagaagatgacaccaacaagaaactggctattgatgat
ataccttctgatggtactggtggtgacatcaagttaggccttaatatgcacatcaaaatt
ctagaaatgggagatgtacatgcacctcctgatgataccgtattgcgtgctgatcctgag
gatgctgatgctgttgtggctgctgaaccagaagatgacacaagcaagaaaatgaccatt
gatggtgtattgtctgatgctaaccatactactgtcaagctaggtgtcaatgtagactgc
aaaattgaacaggaaaaagtaccagcactgcctgatgctattgaattgaatgctgatcct
aagggtgctgatgttgttgtggcagcagagaacatgattcctaaagataatttcagtgtg
aatactttgatgcatggcaatggccacggagactttaagtgctctaatggggacaccaag
cccttcctgtgcagagaaaaagaccaggtatctgaggtcaacccagatctagattctcaa
actaagtgtgtatcaattttcgatgataatatatctgctgacaaaaataatgatctaaag
ggtaacctgaatgctgatgattgtgatttagaactagacgcaaagcaggagatgatcaaa
ccatcatccaccattccctccccaggtgatcttttggaagtgttggatgtcgacaaagag
gtgcataagattggtgccactttgcaagagttaggctccacaagtaatatagacttggac
agagatgaggagagtcctgatggtagttctattgagaaactgaattttgatagttgttca
ggtgatgaatcaatggatgaggatgtgttggaaagtaagcatattgattccaatatcaaa
tctgatgatcttggagagaagacagagtttacctcagagcatgggttgaaagaggtgtct
ctccttgatactgctgctgaggattcctctgcacacacaaaggaagttgtagttgaagag
aagccaccaagtccagctgaaaagaggaaacctgaagatcaagaggtcattgcaaataat
gagccaatcaaacggcagcgcctacggaacgtgaatgatgtcgatatttctgaacaaaaa
gcacccaaattaactggcaccggtactccgaaggaagtctttcattatgctccgagccat
tcttttggcaggcctggcacaacagcaagcagagattatccaaaggagcgaatagtacca
cctgctcaaaaaccagcaacaacttccttaagaattgatcgatttgtgcgcccatttact
ctgaaagctgtgcaagaacttattggtaaaactggatctgtttgtagcttttggatggat
catatcaagacccactgctatgttacttactcttcagtggaggaagcagtggctacgagg
aatgctatctacaacctccagtggcccccaaacaaccgcaactatctggtcgctgaattt
gtcgatccagaagaggtggagctcaaacttgaagcccctcccccatctcaagtgcctatc
agcttgagcacagctatagcaccacaggcagcacccttccaacaacccaatgctaaccaa
accctacctccccaacctgctgctgctctgttgccaactccagcacctcttgccaagctg
ccgcctatctctggccctggaccagcaagagagatgcttcttccccctcctccaaggaac
ctggaacctccccggacactggatgatctcttcaagaagacacaggcgcatccaaggatt
tactatatgcccttgtccgaatag
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