Setaria viridis (green foxtail): 117845339
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Entry
117845339 CDS
T07951
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117845339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117845339
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
117845339
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
117845339
NCBI-ProteinID:
XP_034582243
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All DBs
Position
1:32577975..32583443
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AA seq
1419 aa
AA seq
DB search
MVEGGGSGLRLIKDEPFDDSGGDWARSASAKPPPALAAAAAPPGTSYAKRKRKREPSRLK
PDARGDNRALDRSSSASGTGRRAMGSSSASRERNSVKSRESGRGGAGGRSVSSKKSFVPS
EESSGAPGNARHGGSTRSGESRCAPGKARRGGSTRSGESRCAPGKARRGGSTRSGESRCA
PGKARRGGSTRSGERSNNALPAGWVGTTVGSRIRSRSRQQARVQYATYSARVPSEETEED
EDAEEVQEQEQKKGEEVEVMEVDEQEESGSDTEVAQESEQEEAAKGRSKQNGHGHSEEVQ
VQVQEHEQKTAGDMEVMEEEDSGSGNEVSQESEQEEAVEARSRQNGHGDSEEVQEQEQKT
GEDVEVDEDSRSGNEISQASENEESVERRSRQNGHGDSEDGYEESKDSAAVADNEEEVGE
KEMLEEEGDNQEDSHSIYDGEDEEEDGESEDDGHELGETGEVQPLTSSNAMAGGSVRSGG
DGPRVFKRRIFEGICLLENPDSVGYVAKGIQGRTRSQRKCKDKKLLKRGTFSKPYNIDIP
DSTSESEEDIVPPALQGGLMSSSDEDSRIFGKRKRRRARNKRWRKGLSTSSDESKEYRAY
ARDAGGAFWRLKKGASNLQVGKSGSNPGRAKYNGPNGGNPTDMANAQDGISFKRKAHTMR
MKKRGRAAKDAYDELLNTLFAGWENHIDVPDHAENGNSLPLVFSFGDEDEPYEKTENDKY
QEDLWRECGIAFESMNIGSHEEDGQAVPPAEEASCKNGKHEFIIDEQIGVRCKHCHVVDL
EIRHVLPAMGKISAERELAIEPELDSMFKEMLNIFEENDVLVSNGHGVPCNFGGRRAGSV
WDLIPGVKEDMFPHQQDAFEFMWTKLAGGTTIEQLKHTANTDVGGGCVISHAPGTGKTRL
AITFVQSYLELFPHCSPVIIAPRGMLATWEKEFRKWKVKLPFHVLNSTEINWSEDKTIRE
QAAKNGTFHRRLLTDKMDQNYRRLVKLGSWMNGTSIIGVSYSLFRKLVNDEGMDGDKVTN
LLLEKPNLLVLDEGHTPRNKKSLIWKVLSEVRTEKRIILSGTPFQNNFEELYNTLCLVRP
KDAIILEKDEGKDFWTSLRLNDITKANIDQVRKKLDPVVHIHSGKFLQKSLPGLRESVVI
LNPLPYQKEVITSMEKTIAMGLDAEYKISLASIHPSLIARAKLSEKEESMVDKPKLESLR
SSPSEGVKTRFVLEIVNLCEALNERVLVFSQYLDPLSLIMEQLKARFNWAEGKEILLMSG
NVLVKNRQTMMETFNNMKSKAKVMLASTKACCEGITLIGASRVVLLDVVWNPSVGRQAIG
RAYRIGQEKIVYTYNLIAEGTAEKSKYDRQAKKEHMSKLLFSKEVEHGDLPPELTLNDRI
LEEMTAREDLKKLFVKIYIDNQTDGSPGETEKNTTCAHA
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaggggggcggcagtggcctgaggctcatcaaggacgagcctttcgacgattcc
ggcggcgattgggctcgttcagcgtcagcaaaaccgccgccagccttggcggcggcggct
gctcccccaggaacctcctacgcgaagaggaaacggaagagggagcccagtagactcaag
cctgatgcgcgtggcgacaatcgcgcgttggaccggagttccagcgcttcaggaactggg
cgtcgcgcgatggggagttcgagcgcttcaagggagaggaacagtgtgaagagcagagaa
tcaggcaggggaggcgcgggtggccggtcggtttcgtccaagaagagcttcgtgcccagc
gaggaatccagcggtgcccccgggaatgcgaggcatggagggagtacgagaagtggcgaa
tccaggtgtgcccccgggaaggcgaggcgtggagggagtacgagaagtggcgaatcaagg
tgtgcccccgggaaggcgaggcgtggagggagtacgagaagtggcgaatcaaggtgtgcc
cccgggaaggcgaggcgtggagggagtacgagaagtggcgagaggagcaataatgcttta
ccggcgggctgggtcgggaccacggtcggttcgaggatccgttcaaggtcgcgtcagcag
gcgagagtgcagtatgctacatattctgctcgagtgccgtccgaggaaacagaggaggac
gaagatgcagaggaggttcaggagcaggagcagaaaaagggggaagaagtggaggtgatg
gaggtggatgagcaggaggaaagtgggtctgatactgaagtggcccaagagagtgagcag
gaagaggctgcgaagggaaggagcaagcagaatggccatggccatagtgaggaggtgcag
gtgcaggtgcaggagcacgagcagaaaacggcgggagatatggaggttatggaggaggag
gacagtgggtctggcaatgaagtatcccaagagagtgagcaagaagaggctgtggaggca
aggagcagacagaatggccatggtgatagtgaggaggtgcaggagcaggagcagaaaaca
ggggaagatgtggaggtggatgaggacagtaggtctggcaatgaaatatcccaagcgagt
gagaatgaagagtctgtggagcgaaggagcagacagaatggccatggcgatagtgaggac
ggatacgaggaaagcaaagattctgctgctgttgctgataatgaggaggaggtgggggaa
aaggaaatgttggaggaggaaggtgacaatcaagaagacagccatagcatctacgatggc
gaagacgaagaagaagatggtgaatccgaagatgatgggcatgaattgggtgaaacaggg
gaggtgcaaccattaacgtccagcaacgccatggcaggtggcagtgtcaggtcaggaggc
gacggcccccgagtcttcaagaggaggatttttgaggggatatgtttgcttgagaaccct
gattcagttggatatgttgccaagggtatccaagggcggacacgatcacagcgaaaatgc
aaggacaagaaactgctcaaacgtggaactttcagtaaaccttacaatattgatattcca
gattcgacatcagaatctgaagaggatatagtgccaccagcgctgcagggagggctaatg
tcatcaagtgacgaggacagcaggatttttggcaaaagaaagcgcaggagagcaagaaac
aagagatggcgcaagggactgagtaccagtagtgatgagtctaaggagtacagagcatat
gcaagagatgccgggggggctttttggaggctgaagaagggggcgtccaatctgcaggtt
ggcaagagtggttcaaatcctggccgtgctaaatacaatggtccaaatggcgggaatcca
acggacatggccaatgcacaggatggtatttccttcaaaagaaaggcacatacgatgagg
atgaagaagcgcggtcgagcagcaaaagacgcttatgatgagctactcaataccttgttt
gccggatgggagaatcatatagatgttcctgatcatgcagaaaatggaaatagtttgcct
ttggtgttctcattcggagatgaagatgaaccatacgaaaaaacagaaaatgataagtat
caggaagatttgtggagggaatgtggcattgctttcgaatccatgaatattggttctcat
gaagaggatgggcaagcagttcctccagcggaagaagcttcatgcaaaaacgggaagcat
gaattcattatcgatgaacaaataggagttcggtgcaagcattgtcatgttgtcgatctt
gagatcagacatgtactgcctgctatggggaagatttctgcggaaagggaattggcaatt
gaacctgagttggactcgatgtttaaggaaatgctcaatatttttgaagaaaatgatgtg
ctggtatcaaatggacatggagtgccatgcaattttggtggtcgcagagctggttcagtc
tgggatctcattcctggagtcaaggaagacatgttcccacaccagcaggatgcatttgag
ttcatgtggaccaagcttgcaggaggtactacaattgaacagctaaagcacaccgcaaac
actgatgttggaggtggctgtgttatttctcatgcccctgggacgggaaagacccggtta
gcaatcacatttgttcaatcctaccttgagcttttcccgcactgtagtccagtgatcatt
gctccaagggggatgttagcaacatgggagaaggagttcaggaaatggaaggtgaagctc
ccttttcatgtactgaattccactgagatcaactggagtgaagacaagaccatccgtgaa
caggctgcaaagaatggaacttttcatcggaggttattgacagataaaatggatcaaaat
tataggcgtttggtgaagttagggtcctggatgaatggtaccagcataattggtgtgagc
tactcgcttttcaggaagctagtgaatgatgaaggcatggatggggataaggtgacaaat
ctcctccttgagaaacccaacctgcttgtccttgatgaagggcacacaccaaggaacaag
aaaagtctgatctggaaggttcttagcgaggtccgcacagaaaagcgaataattctatca
gggactccattccaaaacaactttgaggagctttataacaccctatgtcttgtcaggcca
aaggatgcaattattctggagaaggacgagggcaaagatttctggacttcgttgagattg
aatgacatcacaaaggcaaacatagatcaagtaaggaaaaaattggaccctgtagtgcac
atccatagtggcaaatttcttcagaagtctctcccaggactgagagaatccgttgtgatt
ctgaatcctcttccttatcagaaagaagtcatcacaagtatggagaagactatagcaatg
ggtcttgatgcggaatacaagatctcacttgcatcaatacatccatccctcattgccaga
gcaaaattgtctgagaaagaggagtctatggttgacaagcctaagctagagagtttacga
tcctctccatcggaaggggttaagacgaggtttgttttggaaattgtcaatctttgtgaa
gcattaaatgagcgggtactagtattcagccaatatcttgatccattgtccttgatcatg
gagcagctgaaagcaaggttcaattgggctgaaggcaaagagatcctgctaatgagtgga
aatgtcctggttaaaaatcgccaaaccatgatggaaacttttaataacatgaaaagcaag
gccaaggtaatgcttgcatcaaccaaggcatgctgtgaaggcattacgcttattggagca
tcacgtgtggttctacttgatgttgtgtggaacccttcagttggaaggcaagccatcggc
cgagcttacagaatcggtcaggagaagattgtgtacacgtacaatctaattgcagaaggc
acagcagagaagagcaaatatgacaggcaagctaagaaggagcacatgtctaaattgctc
ttttcaaaagaagtggagcatggagacttgccaccagaactaacactcaatgataggatt
ttggaagaaatgactgcacgtgaagacctcaaaaaattgtttgtaaagatttacattgat
aatcaaactgatggttcacctggagagacggagaagaacactacatgtgcacatgcctaa
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